[UPDATE] repository name odeon-landcodev to odeon (#2)

* [UPDATE] repository name odeon-landcodev to odeon

* [UPDATE] fix typo odeondocumentation to odeon documentation

.gitignore

@@ -9,3 +9,139 @@ tests/fixture
 tests/fixture/*
 _build/
 docs/_build
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+git_bck/
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+.idea/
+.idea*
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# configurations cli
+configs
+configs/
+config

CHANGELOG.rst

@@ -1,116 +1,118 @@
 Changes
 =======
 
-0.1 (2020-12-14)
-----------------
-- add grid sampling
-- add generation of dataset
-- add systematic sampling
-- add zone detection based on extent and raster dalle
-- add patch detection
-- add documentation
-- add CI/CD with static code analysic, build doc, publish doc job
+0.2.19 (2023-03-19)
+-------------------
+- Update repository name from odeon-landcover to odeon, corrections on readme and doc
+- Change changelogs order from asc chronological order to desc.
+- update url of repository in setup.py
 
-0.1.1 (2021-01-06)
-------------------
-- fix issue 16
-- fix resolution change in detection
+0.2.18 (2022-06-24)
+-------------------
+- Update documentation and doc configuration after transfert from gitlab to github
 
-0.2 (2021-09-13)
-------------------
-- add tool stats
-- add tool metrics
-- add of the documentation relative to these tools
-- add module report
+0.2.17 (2022-06-23)
+-------------------
+- Fix issue #19 : batch mode of the generate dataset tool makes multiple copy of sample in csv
+- Fix issue #46 : bug in generate when using shapefile having geometries with Z attribute
+- Fix issue #47 : Detect by zone has a shift of 1 pixel on result on same case
+- Fix Issue #49 : Detect zone wrong extend and resolution output when asking a resolution different from source data
+- remove test on gdal tools in setup.py (see #48)
 
-0.2.1 (2021-09-14)
-------------------
-- fix zone detection problem in tile generation
+0.2.16 (2022-06-20)
+-------------------
+- Implement Feature issue #8 : implement "continue training" feature
+- Fix issue #15 : grid sampling : tile can be outside the zone
+- Fix issue #38 : spatial shift with sampling_sys
 
-0.2.2 (2021-09-14)
-------------------
-- removed the image_to_ndarray (using gdal) replacing every call to raster_to_ndarray (using rasterio). Should fix issue 22 (closed)
+0.2.15 (2022-02-21)
+-------------------
+- Fix issue 45: Metrics - Problem reading file name during dataset creation
 
-0.2.3 (2021-09-24)
+0.2.14 (2021-01-11)
+-------------------
+- Fix issue 44: Deployment script changes in relation to pylint developments.
+- Fix issues 43: Metrics: use the tool with predictions and masks of differents shapes.
+- Refactoring of metrics code (to correct fiew problems on testing parameters and to gather plot functions).
+
+0.2.13 (2021-11-18)
+-------------------
+- Fix issue 40: Metrics: problem with labels in the case of class selection.
+- Fix issue 41: Forgot to change version and do modifcations on CHANGELOG.rst file.
+
+0.2.12 (2021-10-22)
 ------------------
-- Correct the problem in generation when a source have NoDataValue. Should fix issue 23.
-- fix minimum version number for packages pandas and geopandas. Fix issue #30 (closed)
-- fix problem of homogeneity in band indices between tools in code and in documentation. Fix issue #29 (closed)
+- fix issue 39: Reports become unreadable when the number of classes is too high and we would like to add the
+possibility to output in a csv file the threshold values corresponding to each point of the ROC/PR curves.
 
-0.2.4 (2021-09-27)
+0.2.11 (2021-10-21)
 ------------------
-- Refactoring of DEM computation to align detection and generation. Fix issue # 21 (closed)
-- Correction of bug when bands are after DSM or DTM when dem option is set to true. Fix issue #20 (closed)
-- Fixing the option compute_only_mask to compute only masks and not images. Fix issue #18 (closed)
-- Correct problems in stats related to the modifications made to remove gdal dependencies. Fix issue #24 (closed)
+- fix issue 31 : metric script don't work when predicition and mask files do not have the same number of bands.
+- add the feature to select the classes on which we want to use the metrics
+- correction on cm figure size when the number of classes is large.
+- correction on the export of metrics in a json file.
 
-0.2.5 (2021-09-27)
+0.2.9 (2021-10-05)
 ------------------
-- fix issue with BCE loss.
-  Don't call torch loss directly and convert target tensor to long only for CrossEntropyWithLogitLoss.
+- fix issue 34 : regression introduced in generate dataset on batch mode.
 
-0.2.6 (2021-09-30)
+0.2.8 (2021-10-04)
 ------------------
-- fix issue with new mobilenetv2 module on new torchvision version without regression
+- fix regression introduce in v0.2.4 in detection zone.
 
 0.2.7 (2021-09-31)
 ------------------
 - improve miou computation speed during training
   use pytorch in place of numpy to do MiOu computation.
 
-0.2.8 (2021-10-04)
+0.2.6 (2021-09-30)
 ------------------
-- fix regression introduce in v0.2.4 in detection zone.
+- fix issue with new mobilenetv2 module on new torchvision version without regression
 
-0.2.9 (2021-10-05)
+0.2.5 (2021-09-27)
 ------------------
-- fix issue 34 : regression introduced in generate dataset on batch mode.
+- fix issue with BCE loss.
+  Don't call torch loss directly and convert target tensor to long only for CrossEntropyWithLogitLoss.
 
-0.2.10 (2021-10-08)
+0.2.4 (2021-09-27)
 ------------------
-- fix issue 35 : generation and detection regression since 0.2.4 in float conversion
+- Refactoring of DEM computation to align detection and generation. Fix issue # 21 (closed)
+- Correction of bug when bands are after DSM or DTM when dem option is set to true. Fix issue #20 (closed)
+- Fixing the option compute_only_mask to compute only masks and not images. Fix issue #18 (closed)
+- Correct problems in stats related to the modifications made to remove gdal dependencies. Fix issue #24 (closed)
 
-0.2.11 (2021-10-21)
+0.2.3 (2021-09-24)
 ------------------
-- fix issue 31 : metric script don't work when predicition and mask files do not have the same number of bands.
-- add the feature to select the classes on which we want to use the metrics 
-- correction on cm figure size when the number of classes is large.
-- correction on the export of metrics in a json file.
+- Correct the problem in generation when a source have NoDataValue. Should fix issue 23.
+- fix minimum version number for packages pandas and geopandas. Fix issue #30 (closed)
+- fix problem of homogeneity in band indices between tools in code and in documentation. Fix issue #29 (closed)
 
-0.2.12 (2021-10-22)
+0.2.2 (2021-09-14)
 ------------------
-- fix issue 39: Reports become unreadable when the number of classes is too high and we would like to add the
-possibility to output in a csv file the threshold values corresponding to each point of the ROC/PR curves.
-
-0.2.13 (2021-11-18)
--------------------
-- Fix issue 40: Metrics: problem with labels in the case of class selection.
-- Fix issue 41: Forgot to change version and do modifcations on CHANGELOG.rst file.
-
-0.2.14 (2021-01-11)
--------------------
-- Fix issue 44: Deployment script changes in relation to pylint developments.
-- Fix issues 43: Metrics: use the tool with predictions and masks of differents shapes.
-- Refactoring of metrics code (to correct fiew problems on testing parameters and to gather plot functions).
+- removed the image_to_ndarray (using gdal) replacing every call to raster_to_ndarray (using rasterio). Should fix issue 22 (closed)
 
-0.2.15 (2022-02-21)
--------------------
-- Fix issue 45: Metrics - Problem reading file name during dataset creation
+0.2.1 (2021-09-14)
+------------------
+- fix zone detection problem in tile generation
 
-0.2.16 (2022-06-20)
--------------------
-- Implement Feature issue #8 : implement "continue training" feature
-- Fix issue #15 : grid sampling : tile can be outside the zone
-- Fix issue #38 : spatial shift with sampling_sys
+0.2 (2021-09-13)
+------------------
+- add tool stats
+- add tool metrics
+- add of the documentation relative to these tools
+- add module report
 
-0.2.17 (2022-06-23)
--------------------
-- Fix issue #19 : batch mode of the generate dataset tool makes multiple copy of sample in csv 
-- Fix issue #46 : bug in generate when using shapefile having geometries with Z attribute  
-- Fix issue #47 : Detect by zone has a shift of 1 pixel on result on same case 
-- Fix Issue #49 : Detect zone wrong extend and resolution output when asking a resolution different from source data 
-- remove test on gdal tools in setup.py (see #48)
+0.1.1 (2021-01-06)
+------------------
+- fix issue 16
+- fix resolution change in detection
 
-0.2.18 (2022-06-24)
--------------------
-- Update documentation and doc configuration after transfert from gitlab to github
+0.1 (2020-12-14)
+----------------
+- add grid sampling
+- add generation of dataset
+- add systematic sampling
+- add zone detection based on extent and raster dalle
+- add patch detection
+- add documentation
+- add CI/CD with static code analysic, build doc, publish doc job

README.md

@@ -10,19 +10,19 @@ sensing images (aerial and/or satellite) with as many layers as you wish.
 
 These instructions assume that you already have [conda](https://conda.io/) installed.
 
-First, download and extract a copy of odeon from [repository](https://github.com/IGNF/odeon-landcover.git).
+First, download and extract a copy of odeon from [repository](https://github.com/IGNF/odeon;.git).
 Then navigate to the root of the odeon directory in a terminal and run the following:
 
 ```bash
 # Clone repository
-git clone [email protected]:IGNF/odeon-landcover.git
+git clone [email protected]:IGNF/odeon.git
 or
-git clone https://github.com/IGNF/odeon-landcover.git
+git clone https://github.com/IGNF/odeon.git
 or
-download a release at tag github page https://github.com/IGNF/odeon-landcover/tags
+download a release at tag github page https://github.com/IGNF/odeon/tags
 
 # Go to the root project folder
-cd odeon-landcover
+cd odeon
 
 # Install the environment
 conda env create --file=environment.yml