Fix calculate_derivatives for PETSc #10058

Job	Run time
(util) Check if should run	4s
pytest (py3.8/linux/integration)	17m 7s
Run tests from site-packages (non-editable) installation (pip-default/linux)	25m 52s
pytest (py3.8/win64/integration)	33m 56s
Run examples (py3.8/linux)	10m 33s
Run tests from site-packages (non-editable) installation (pip-complete/linux)	27m 26s
pytest (py3.9/linux/integration)	16m 42s
Run examples (py3.8/win64)	22m 17s
Run tests from site-packages (non-editable) installation (pip-all/linux)	28m 17s
pytest (py3.9/win64/integration)	29m 0s
Run examples (py3.9/linux)	9m 54s
Run tests from site-packages (non-editable) installation (conda-like/linux)	26m 26s
pytest (py3.10/linux/integration)	14m 53s
Run examples (py3.9/win64)	24m 34s
pytest (py3.10/win64/integration)	32m 40s
Run examples (py3.10/linux)	9m 28s
pytest (py3.11/linux/integration)	13m 39s
Run examples (py3.10/win64)	24m 37s
pytest (py3.11/win64/integration)	29m 16s
Run examples (py3.11/linux)	8m 59s
pytest (py3.12/linux/integration)	13m 7s
Run examples (py3.11/win64)	21m 39s
pytest (py3.12/win64/integration)	26m 50s
Run examples (py3.12/linux)	7m 27s
Run examples (py3.12/win64)	16m 11s
	8h 10m 54s

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