Select: problem-specific minimize method for SaCeSS

[dilpath]

Example use

from pypesto.optimize.ess import SacessFidesFactory
from pypesto.select import SacessMinimizeMethod

minimize_options = {
    'startpoint_method': pypesto.startpoint.UniformStartpoints(),
}
minimize_method = SacessMinimizeMethod(
    num_workers=5,
    local_optimizer=SacessFidesFactory(fides_kwargs={
        'verbose': 0,
        'hessian_update': fides.BFGS()
    }),
    max_walltime_s=60,
    sacess_loglevel=logging.DEBUG,
    ess_loglevel=logging.WARNING,
)
model_problem_options = {
    'minimize_method': minimize_method,
    'minimize_options': minimize_options,
    'objective_customizer': objective_customizer,
}

best_models = pypesto_select_problem.select_to_completion(
    candidate_space=candidate_space,
    model_problem_options=model_problem_options,
)

[codecov-commenter]

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Codecov Report

Attention: Patch coverage is 0% with 31 lines in your changes missing coverage. Please review.

Project coverage is 80.53%. Comparing base (3859aef) to head (e6b5ead).

Files	Patch %	Lines
pypesto/select/misc.py	0.00%	27 Missing ⚠️
pypesto/select/model_problem.py	0.00%	3 Missing ⚠️
pypesto/select/__init__.py	0.00%	1 Missing ⚠️

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Additional details and impacted files

@@                       Coverage Diff                       @@
##           select_use_old_calibrations    #1339      +/-   ##
===============================================================
- Coverage                        80.75%   80.53%   -0.22%     
===============================================================
  Files                              161      161              
  Lines                            13465    13494      +29     
===============================================================
- Hits                             10873    10868       -5     
- Misses                            2592     2626      +34     

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[dweindl]

Thanks, looks useful.

[Doresic]

Nice, thank you!

[dilpath]

@Doresic you can use PEtab-dev/petab_select#86 for nicer model hashes, when saving histories