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PEtab: Fix initial state from condition table #408

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merged 1 commit into from
Nov 8, 2024

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@dweindl dweindl commented Nov 8, 2024

Initial state specified via the PEtab condition table was not always handled correctly when there was a NaN in condition table (meaning that the model value should be used).

The parameter mapping code here did not fully keep up with PEtab developments. Most of the required functionality is meanwhile available through AMICI. Use that instead of repeating everything here.

@dweindl dweindl force-pushed the fix_x0_parametermap branch 3 times, most recently from 39c9a52 to c95da7d Compare November 8, 2024 16:49
@dweindl dweindl marked this pull request as ready for review November 8, 2024 19:46
Initial state specified via the PEtab condition table was not always handled correctly when there was a NaN in condition table (meaning that the model value should be used).

The parameter mapping code here did not fully keep up with PEtab developments. Most of the required functionality is meanwhile available through AMICI. Use that instead of repeating everything here.
@dweindl dweindl merged commit db859dd into develop Nov 8, 2024
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@dweindl dweindl deleted the fix_x0_parametermap branch November 8, 2024 19:52
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sonarcloud bot commented Nov 8, 2024

Quality Gate Failed Quality Gate failed

Failed conditions
0.0% Coverage on New Code (required ≥ 80%)

See analysis details on SonarCloud

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