Sync develop changes July 2 - July 19 to hdf5_1_14 #4665

lrknox · 2024-07-19T17:12:41Z

No description provided.

* fixes to address failures in the log-based VOL * moved file cleanup to tests proper * skipped index API test if not supported

HDFGroup#4609)

Bumps the github-actions group with 4 updates: [actions/checkout](https://github.com/actions/checkout), [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials), [softprops/action-gh-release](https://github.com/softprops/action-gh-release) and [github/codeql-action](https://github.com/github/codeql-action). Updates `actions/checkout` from 4.1.1 to 4.1.7 - [Release notes](https://github.com/actions/checkout/releases) - [Commits](actions/checkout@v4.1.1...v4.1.7) Updates `aws-actions/configure-aws-credentials` from 1 to 4 - [Release notes](https://github.com/aws-actions/configure-aws-credentials/releases) - [Changelog](https://github.com/aws-actions/configure-aws-credentials/blob/main/CHANGELOG.md) - [Commits](aws-actions/configure-aws-credentials@v1...v4) Updates `softprops/action-gh-release` from 2.0.5 to 2.0.6 - [Release notes](https://github.com/softprops/action-gh-release/releases) - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) - [Commits](softprops/action-gh-release@69320db...a74c6b7) Updates `github/codeql-action` from 3.25.7 to 3.25.11 - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@f079b84...b611370) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-patch dependency-group: github-actions - dependency-name: aws-actions/configure-aws-credentials dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: softprops/action-gh-release dependency-type: direct:production update-type: version-update:semver-patch dependency-group: github-actions - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-patch dependency-group: github-actions ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Just makes a stack array dynamic. Valgrind shows no memory leaks.

* Reworked cleaning up test files, only removing test files if present to account for skipped tests * changed to using H5Fis_accessible * update to full use of remove_test_file

…DFGroup#4624)

* Always use DECIMAL_DIG instead of LDBL_DIG. This was controlled by an ifdef that is always true in C99 or greater It's confusing to use float.h C constants as variable names in configure.ac and the PAC_FC_LDBL_DIG macro. * Directly compare MY_FLT128_DIG and MY_LDBL_DIG * Make uniform across CMake and Autotools * Don't export quadmath.h variables to H5pubconf.h

* Added Doxygen Awesome and fixed a few quirks. * Fixed unterminated strings. * Added Doxygen Awesome by copy.

* Add show option * remove non-static libs and correct names of static libs * Fixup the pkg-config libs and comp builds * Fix commands and add fortran pkg-config test scripts * Add help usage option

* Fix bad H5VL_t rc on H5O_refresh_metadata fail * Decrement nrefs before raising error

…DFGroup#4640)

* Fixed messed up table captions. Browsers don't seem to respect relative values for width. Hardcoding 800px for now.

CMake version 3.30 changed the behavior of the FetchContent module to deprecate the use of FetchContent_Populate() in favor of FetchContent_MakeAvailable(). Therefore, the copying of HDF specialized CMakeLists.txt files to the dependent project's source was implemented in the FetchContent_Declare() call.

* Add a comment on the FindZLIB.cmake module usage * Allow choice of static/shared compression libs for Find Module * Added new option to INSTALL_CMake file and changed option text

…DFGroup#4648)

INSTALL_autotools.txt.

jhendersonHDF · 2024-07-29T15:37:31Z

HDF5Examples/C/H5G/test-pc.sh

+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.


Probably needs removed as this is a new file and doesn't appear in some of the other new .sh files.

jhendersonHDF · 2024-07-29T15:37:36Z

HDF5Examples/C/H5T/test-pc.sh

+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.


Probably needs removed as this is a new file and doesn't appear in some of the other new .sh files.

jhendersonHDF · 2024-07-29T15:37:54Z

HDF5Examples/FORTRAN/H5G/test-pc.sh

+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.


Probably needs removed as this is a new file and doesn't appear in some of the other new .sh files.

jhendersonHDF · 2024-07-29T15:38:00Z

HDF5Examples/FORTRAN/H5T/test-pc.sh

+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.


Probably needs removed as this is a new file and doesn't appear in some of the other new .sh files.

jhendersonHDF · 2024-07-29T15:41:48Z

doxygen/aliases

+ALIASES += PRJURL="\HDFURL/projects"
+ALIASES += HVURL="github.com/HDFGroup/hdfview/blob/master"
+ALIASES += PLURL="github.com/HDFGroup/hdf5_plugins/blob/master"
+>>>>>>> e716059... Update doxygen Learn Basics / example refs. Add Reference sections (#4640)


git diff line was accidentally added here

brtnfld and others added 22 commits July 19, 2024 11:38

Test fixes for log-based vol (HDFGroup#4618)

1c048bf

* fixes to address failures in the log-based VOL * moved file cleanup to tests proper * skipped index API test if not supported

Add 'try' parameter to H5Z_find, and remove calls to H5E_clear_stack() (

1d67ea4

HDFGroup#4609)

Fix a stack size warning in ros3 VFD code (HDFGroup#4625)

9f71dcb

Just makes a stack array dynamic. Valgrind shows no memory leaks.

Reworked cleaning up API test files (HDFGroup#4626)

54bd41e

* Reworked cleaning up test files, only removing test files if present to account for skipped tests * changed to using H5Fis_accessible * update to full use of remove_test_file

corrected offset type in C wrapper (HDFGroup#4622)

73dabe5

Remove some internal use of API calls and H5E_BEGIN_TRY/H5E_END_TRY (H…

bfade29

…DFGroup#4624)

Remove auto NSIS check because of issues with CI (HDFGroup#4646)

13fe886

Add python testing for examples (HDFGroup#4628)

c35dde2

Feature/awesome (HDFGroup#4604)

a236395

* Added Doxygen Awesome and fixed a few quirks. * Fixed unterminated strings. * Added Doxygen Awesome by copy.

Add tools usage text as doxygen for Tools UG (HDFGroup#4602)

21ffd80

Add h5* compiler wrapper testing for CMake HDFGroup#4605 (HDFGroup#4613)

8051828

* Add show option * remove non-static libs and correct names of static libs * Fixup the pkg-config libs and comp builds * Fix commands and add fortran pkg-config test scripts * Add help usage option

Add temporary fix for ARM64 Mac _Float16 build failure (HDFGroup#4639)

9692264

Correct H5VL_t ref count on H5O_refresh_metadata failure (HDFGroup#4636)

2357412

* Fix bad H5VL_t rc on H5O_refresh_metadata fail * Decrement nrefs before raising error

Update doxygen Learn Basics / example refs. Add Reference sections (H…

7cb0a41

…DFGroup#4640)

Fixed messed up table captions. (HDFGroup#4653)

022f1f1

* Fixed messed up table captions. Browsers don't seem to respect relative values for width. Hardcoding 800px for now.

Fixed usage issue with FindZLIB.cmake module (HDFGroup#4655)

cd40e50

* Add a comment on the FindZLIB.cmake module usage * Allow choice of static/shared compression libs for Find Module * Added new option to INSTALL_CMake file and changed option text

Eliminate more H5E_BEGIN/END_TRY macros and H5E_clear_stack() calls (H…

6b2b70a

…DFGroup#4648)

Correct name of zlib_ng option (HDFGroup#4658)

d0ccb6f

Fix the examples for testing java with binaries (HDFGroup#4660)

7d7c8b2

lrknox requested review from brtnfld, derobins, epourmal, byrnHDF, fortnern, jhendersonHDF, qkoziol and vchoi-hdfgroup as code owners July 19, 2024 17:12

lrknox requested review from bmribler, glennsong09 and mattjala as code owners July 19, 2024 17:12

lrknox added 2 commits July 19, 2024 12:29

Update filename in RELEASE_PROCESS.md to current name

410121d

INSTALL_autotools.txt.

Remove reference to V116 in tools/src/h5repack/h5repack.h.

13d87df

byrnHDF approved these changes Jul 19, 2024

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lrknox merged commit da7f0f7 into HDFGroup:hdf5_1_14 Jul 19, 2024
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lrknox deleted the sync_develop_changes_to_1_14 branch July 24, 2024 14:50

jhendersonHDF reviewed Jul 29, 2024

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Sync develop changes July 2 - July 19 to hdf5_1_14 #4665

Sync develop changes July 2 - July 19 to hdf5_1_14 #4665

lrknox commented Jul 19, 2024

jhendersonHDF Jul 29, 2024

jhendersonHDF Jul 29, 2024

jhendersonHDF Jul 29, 2024

jhendersonHDF Jul 29, 2024

jhendersonHDF Jul 29, 2024

Sync develop changes July 2 - July 19 to hdf5_1_14 #4665

Sync develop changes July 2 - July 19 to hdf5_1_14 #4665

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