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Sync develop branch changes March 4 - 6 to hdf5_1_14 branch #4121

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merged 12 commits into from
Mar 13, 2024

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@lrknox lrknox commented Mar 12, 2024

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byrnHDF and others added 10 commits March 12, 2024 10:42
…st (HDFGroup#4059)

* Offset of a floating-point type also needs to be accounted for

* Clarify ordering of H5Tset_precision and H5Tset_fields
…DFGroup#4061)

H5Tset_fields did not account for any offset in a floating-point datatype,
causing it to fail when a datatype's precision is correctly set such that
it doesn't include the offset bits.
)

* Remove user presets file

* Only use C compiler for sanitzers
* Rename incorrectly named option

* Restore the correct uses of USING_MEMCHECKER

* Update release note
This was due to not freeing a test buffer. It was not a core
library memory leak.
Compound fill values were set to the integer -1, causing valgrind
to flag 'uninitialized bytes' errors.

This is just a problem with the cmpd_dset test and not a core
library problem.
This was due to a complex type fill value being set to -1 instead
of a proper complex value. This was a test problem and not a core
library issue.
@lrknox lrknox added Merge Use this label when a PR is for a downstream merge Branch - 1.14 labels Mar 12, 2024
@lrknox lrknox changed the title 1 14 dev sync lrk Sync develop branch changes March 4 - 6 to hdf5_1_14 branch Mar 12, 2024
@@ -273,7 +273,7 @@ jobs:
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Clang/README.md ${{ runner.workspace }}/build/hdf5
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"build/hdf5" SB "/build114/hdf5"

@@ -146,7 +146,7 @@ jobs:
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-GNUC/README.md ${{ runner.workspace }}/build/hdf5
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"build/hdf5" SB "/build114/hdf5"

@@ -337,7 +337,7 @@ jobs:
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-GNUC-S3/README.md ${{ runner.workspace }}/build/hdf5
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"build/hdf5" SB "/build114/hdf5"

@@ -422,7 +422,7 @@ jobs:
mkdir "${{ runner.workspace }}/build114/hdf5"
Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/README.md -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Intel/README.md -Destination ${{ runner.workspace }}/build/hdf5/
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"build/hdf5" SB "/build114/hdf5"

@@ -501,7 +501,7 @@ jobs:
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Intel/README.md ${{ runner.workspace }}/build/hdf5
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"build/hdf5" SB "/build114/hdf5"

2. Obtain HDF5 source from Github
development branch: https://github.com/HDFGroup/hdf5
last release: https://github.com/HDFGroup/hdf5/releases/latest
hdf5-1_15_"X".tar.gz or hdf5-1_15_"X".zip
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1_15 SB 1_14

-------------------------------------------------------------------------
Individual files needed as mentioned in this document
-------------------------------------------------------------------------
CMake build script from https://github.com/HDFGroup/hdf5/tree/master/config/cmake/scripts:
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master SB hd5_1_14 (and below)

NOTE: this file is available at the HDF web site:
https://portal.hdfgroup.org/display/support/Building+HDF5+with+CMake
NOTE: this file is available in the HDF5 repository, for more information see:
https://github.com/HDFGroup/hdf5/blob/develop/release_docs/USING_CMake_Examples.txt
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develop SB hdf5_1_14

@derobins derobins merged commit 5b7be28 into HDFGroup:hdf5_1_14 Mar 13, 2024
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4 participants