Merge branch 'HDFGroup:develop' into new_mpio_develop

config/sanitizer/README.md

@@ -53,7 +53,7 @@ These obviously force the standard to be required, and also disables compiler-sp
 
 ## Sanitizer Builds [`sanitizers.cmake`](sanitizers.cmake)
 
-Sanitizers are tools that perform checks during a program’s runtime and returns issues, and as such, along with unit testing, code coverage and static analysis, is another tool to add to the programmers toolbox. And of course, like the previous tools, are tragically simple to add into any project using CMake, allowing any project and developer to quickly and easily use.
+Sanitizers are tools that perform checks during a program's runtime and return issues, and as such, along with unit testing, code coverage and static analysis, are another tool to add to the programmer's toolbox. And, of course, like the previous tools, they are simple to add to any project using CMake, allowing any project and developer to quickly and easily use them.
 
 A quick rundown of the tools available, and what they do:
 - [LeakSanitizer](https://clang.llvm.org/docs/LeakSanitizer.html) detects memory leaks, or issues where memory is allocated and never deallocated, causing programs to slowly consume more and more memory, eventually leading to a crash.

doc/img/release-schedule.plantuml

@@ -21,9 +21,9 @@ Project starts 2022-01-01
 [1.10.11] displays on same row as [1.10.9]
 [1.10] is colored in #F6DD60
 
-[1.12] starts 2022-01-01 and lasts 78 weeks
+[1.12] starts 2022-01-01 and lasts 96 weeks
 [1.12.2] happens 2022-04-30
-[1.12.3] happens 2023-06-30
+[1.12.3] happens 2023-10-31
 [1.12.3] displays on same row as [1.12.2]
 [1.12] is colored in #88CCEE
 

doxygen/aliases

@@ -306,7 +306,7 @@ ALIASES += ref_rfc20120523="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/paged_a
 ALIASES += ref_rfc20120501="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/HDF5FileImageOperations.pdf\">HDF5 File Image Operations</a>"
 ALIASES += ref_rfc20120305="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/RFC%20PHDF5%20Consistency%20Semantics%20MC%20120328.docx.pdf\">Enabling a Strict Consistency Semantics Model in Parallel HDF5</a>"
 ALIASES += ref_rfc20120220="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/h5repack_improve_hyperslab_over_chunked_dataset_v1.pdf\"><tt>h5repack</tt>: Improved Hyperslab selections for Large Chunked Datasets</a>"
-ALIASES += ref_rfc20120120="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/2012-1-25-Maintainers-guide-for-datatype.docx.pdf\">A Maintainer’s Guide for the Datatype Module in HDF5 Library</a>"
+ALIASES += ref_rfc20120120="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/2012-1-25-Maintainers-guide-for-datatype.docx.pdf\">A Maintainer's Guide for the Datatype Module in HDF5 Library</a>"
 ALIASES += ref_rfc20120104="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/RFC_actual_io_v4-1_done.docx.pdf\">Actual I/O Mode</a>"
 ALIASES += ref_rfc20111119="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/RFC-H5Ocompare-review_v6.pdf\">New public functions to handle comparison</a>"
 ALIASES += ref_rfc20110825="<a href=\"https://docs.hdfgroup.org/hdf5/rfc/2011-08-31-RFC_H5Ocopy_Named_DT_v2.docx.pdf\">Merging Named Datatypes in H5Ocopy()</a>"

doxygen/dox/IntroHDF5.dox

@@ -124,7 +124,7 @@ It is a 2-dimensional 5 x 3 array (the dataspace). The datatype should not be co
 </ul>
 
 \subsubsection subsec_intro_desc_prop_dspace Dataspaces
-A dataspace describes the layout of a dataset’s data elements. It can consist of no elements (NULL),
+A dataspace describes the layout of a dataset's data elements. It can consist of no elements (NULL),
 a single element (scalar), or a simple array.
 
 <table>
@@ -141,7 +141,7 @@ in size (i.e. they are extendible).
 
 There are two roles of a dataspace:
 \li It contains the spatial information (logical layout) of a dataset stored in a file. This includes the rank and dimensions of a dataset, which are a permanent part of the dataset definition.
-\li It describes an application’s data buffers and data elements participating in I/O. In other words, it can be used to select a portion or subset of a dataset.
+\li It describes an application's data buffers and data elements participating in I/O. In other words, it can be used to select a portion or subset of a dataset.
 
 <table>
 <caption>The dataspace is used to describe both the logical layout of a dataset and a subset of a dataset.</caption>

doxygen/dox/high_level/extension.dox

@@ -392,7 +392,7 @@ H5_HLRDLL herr_t H5LRread_region(hid_t obj_id,
  *
  * \details H5LRget_region_info() queries information about the data
  *          pointed by a region reference \p ref. It returns one of the
- *          absolute paths to a dataset, length of the path, dataset’s rank
+ *          absolute paths to a dataset, length of the path, dataset's rank
  *          and datatype, description of the referenced region and type of
  *          the referenced region. Any output argument can be NULL if that
  *          argument does not need to be returned.

doxygen/examples/tables/fileDriverLists.dox

@@ -94,8 +94,8 @@ version of the file can be written back to disk or abandoned.</td>
 <tr>
 <td>Family</td>
 <td>#H5FD_FAMILY</td>
-<td>With this driver, the HDF5 file’s address space is partitioned into pieces and sent to
-separate storage files using an underlying driver of the user’s choice. This driver is for
+<td>With this driver, the HDF5 file's address space is partitioned into pieces and sent to
+separate storage files using an underlying driver of the user's choice. This driver is for
 systems that do not support files larger than 2 gigabytes.</td>
 <td>#H5Pset_fapl_family</td>
 </tr>

examples/ph5_filtered_writes.c

@@ -125,7 +125,6 @@ write_dataset_no_overlap(hid_t file_id, hid_t dxpl_id)
     hsize_t    start[EXAMPLE_DSET_DIMS];
     hsize_t    stride[EXAMPLE_DSET_DIMS];
     hsize_t    count[EXAMPLE_DSET_DIMS];
-    size_t     i, j;
     hid_t      dset_id        = H5I_INVALID_HID;
     hid_t      dcpl_id        = H5I_INVALID_HID;
     hid_t      file_dataspace = H5I_INVALID_HID;
@@ -244,7 +243,6 @@ write_dataset_overlap(hid_t file_id, hid_t dxpl_id)
     hsize_t     start[EXAMPLE_DSET_DIMS];
     hsize_t     stride[EXAMPLE_DSET_DIMS];
     hsize_t     count[EXAMPLE_DSET_DIMS];
-    size_t      i, j;
     hid_t       dset_id        = H5I_INVALID_HID;
     hid_t       dcpl_id        = H5I_INVALID_HID;
     hid_t       file_dataspace = H5I_INVALID_HID;

examples/ph5_filtered_writes_no_sel.c

@@ -126,7 +126,6 @@ write_dataset_some_no_sel(hid_t file_id, hid_t dxpl_id)
     hsize_t    stride[EXAMPLE_DSET_DIMS];
     hsize_t    count[EXAMPLE_DSET_DIMS];
     hbool_t    no_selection;
-    size_t     i, j;
     hid_t      dset_id        = H5I_INVALID_HID;
     hid_t      dcpl_id        = H5I_INVALID_HID;
     hid_t      file_dataspace = H5I_INVALID_HID;

fortran/src/H5Af.c

@@ -259,7 +259,7 @@ h5adelete_by_idx_c(hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen, int_f
  *                          H5_ITER_NATIVE   - No particular order, whatever is fastest
  *                          H5_ITER_N	     - Number of iteration orders
  *
- *  n  - Attribute’s position in index
+ *  n  - Attribute's position in index
  *  attr_id  - Attribute identifier
  *  size  - Buffer size ! *TEST* check for 0 value *CHECK* should this return the correct value
  *
@@ -331,7 +331,7 @@ h5aget_name_by_idx_c(hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen, int_
  *
  *  corder_valid - Indicates whether the creation order data is valid for this attribute
  *  corder - Is a positive integer containing the creation order of the attribute
- *  cset - Indicates the character set used for the attribute’s name
+ *  cset - Indicates the character set used for the attribute's name
  *  data_size - indicates the size, in the number of characters, of the attribute
  *
  * RETURNS
@@ -388,13 +388,13 @@ h5aget_info_c(hid_t_f *loc_id, int_f *corder_valid, int_f *corder, int_f *cset,
  *                          H5_ITER_NATIVE   - No particular order, whatever is fastest
  *                          H5_ITER_N	     - Number of iteration orders
  *
- *  n - Attribute’s position in index
+ *  n - Attribute's position in index
  *  lapl_id - Link access property list
  * OUTPUTS
  *
  *  corder_valid - Indicates whether the creation order data is valid for this attribute
  *  corder - Is a positive integer containing the creation order of the attribute
- *  cset - Indicates the character set used for the attribute’s name
+ *  cset - Indicates the character set used for the attribute's name
  *  data_size - indicates the size, in the number of characters, of the attribute
  *
  * RETURNS
@@ -455,7 +455,7 @@ h5aget_info_by_idx_c(hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen, int_
  *
  *  corder_valid - Indicates whether the creation order data is valid for this attribute
  *  corder - Is a positive integer containing the creation order of the attribute
- *  cset - Indicates the character set used for the attribute’s name
+ *  cset - Indicates the character set used for the attribute's name
  *  data_size - indicates the size, in the number of characters, of the attribute
  *
  * RETURNS

fortran/src/H5Aff.F90

@@ -456,7 +456,7 @@ END SUBROUTINE h5aget_name_f
 !!                 \li H5_ITER_DEC_F       - Decreasing order
 !!                 \li H5_ITER_NATIVE_F    - No particular order, whatever is fastest
 !!                 \li H5_ITER_N_F         - Number of iteration orders
-!! \param n        Attribute’s position in index
+!! \param n        Attribute's position in index
 !! \param name     Attribute name
 !! \param hdferr   \fortran_error
 !!
@@ -687,7 +687,7 @@ END SUBROUTINE h5aget_storage_size_f
 !! \brief Gets an attribute creation property list identifier
 !!
 !! \param attr_id          Identifier of the attribute
-!! \param creation_prop_id Identifier for the attribute’s creation property
+!! \param creation_prop_id Identifier for the attribute's creation property
 !! \param hdferr           \fortran_error
 !!
 !! See C API: @ref H5Aget_create_plist()
@@ -1080,7 +1080,7 @@ END SUBROUTINE h5adelete_by_name_f
 !!                 \li H5_ITER_DEC_F       - Decreasing order
 !!                 \li H5_ITER_NATIVE_F    - No particular order, whatever is fastest
 !!                 \li H5_ITER_N_F         - Number of iteration orders
-!! \param n        Attribute’s position in index.
+!! \param n        Attribute's position in index.
 !! \param attr_id  Attribute identifier.
 !! \param hdferr   \fortran_error
 !! \param aapl_id  Attribute access property list.
@@ -1152,7 +1152,7 @@ END SUBROUTINE h5aopen_by_idx_f
 !!                 \li H5_ITER_DEC_F       - Decreasing order
 !!                 \li H5_ITER_NATIVE_F    - No particular order, whatever is fastest
 !!                 \li H5_ITER_N_F         - Number of iteration orders
-!! \param n        Attribute’s position in index.
+!! \param n        Attribute's position in index.
 !! \param attr_id  Attribute identifier.
 !! \param es_id    \fortran_es_id
 !! \param hdferr   \fortran_error
@@ -1237,7 +1237,7 @@ END SUBROUTINE h5aopen_by_idx_async_f
 !!                       NOTE: In C it is defined as a structure: H5A_info_t.
 !! \param f_corder_valid Indicates whether the creation order data is valid for this attribute.
 !! \param corder         Is a positive integer containing the creation order of the attribute.
-!! \param cset           Indicates the character set used for the attribute’s name.
+!! \param cset           Indicates the character set used for the attribute's name.
 !! \param data_size      Indicates the size, in the number of characters, of the attribute.
 !! \param hdferr         \fortran_error
 !!
@@ -1283,10 +1283,10 @@ END SUBROUTINE h5aget_info_f
 !! \param obj_name       Name of object to which attribute is attached, relative to location
 !! \param idx_type       Type of index
 !! \param order          Index traversal order
-!! \param n              Attribute’s position in index
+!! \param n              Attribute's position in index
 !! \param f_corder_valid Indicates whether the creation order data is valid for this attribute
 !! \param corder         Is a positive integer containing the creation order of the attribute
-!! \param cset           Indicates the character set used for the attribute’s name
+!! \param cset           Indicates the character set used for the attribute's name
 !! \param data_size      Indicates the size, in the number of characters, of the attribute
 !! \param hdferr         \fortran_error
 !! \param lapl_id        Link access property list
@@ -1359,7 +1359,7 @@ END SUBROUTINE h5aget_info_by_idx_f
 !! \param attr_name      Attribute name
 !! \param f_corder_valid Indicates whether the creation order data is valid for this attribute
 !! \param corder         Is a positive integer containing the creation order of the attribute
-!! \param cset           Indicates the character set used for the attribute’s name
+!! \param cset           Indicates the character set used for the attribute's name
 !! \param data_size      Indicates the size, in the number of characters, of the attribute
 !! \param hdferr         \fortran_error
 !! \param lapl_id        Link access property list
@@ -1701,7 +1701,7 @@ END SUBROUTINE h5aexists_async_f
 !! \brief Determines whether an attribute with a given name exists on an object
 !!
 !! \param loc_id      Location identifier
-!! \param obj_name    Object name either relative to loc_id, absolute from the file’s root group, or '. '(a dot)
+!! \param obj_name    Object name either relative to loc_id, absolute from the file's root group, or '. '(a dot)
 !! \param attr_name   Attribute name
 !! \param attr_exists Attribute exists status
 !! \param hdferr      \fortran_error
@@ -1758,7 +1758,7 @@ END SUBROUTINE h5aexists_by_name_f
 !! \brief Asynchronously determines whether an attribute with a given name exists on an object
 !!
 !! \param loc_id      Location identifier
-!! \param obj_name    Object name either relative to loc_id, absolute from the file’s root group, or '. '(a dot)
+!! \param obj_name    Object name either relative to loc_id, absolute from the file's root group, or '. '(a dot)
 !! \param attr_name   Attribute name
 !! \param attr_exists Pointer to attribute exists status, must be of type LOGICAL(C_BOOL) and initialize to .FALSE.
 !! \param es_id       \fortran_es_id
@@ -1829,7 +1829,7 @@ END SUBROUTINE h5aexists_by_name_async_f
 !! \brief Opens an attribute for an object by object name and attribute name.
 !!
 !! \param loc_id    Location from which to find object to which attribute is attached
-!! \param obj_name  Object name either relative to loc_id, absolute from the file’s root group, or '.' (a dot)
+!! \param obj_name  Object name either relative to loc_id, absolute from the file's root group, or '.' (a dot)
 !! \param attr_name Attribute name
 !! \param attr_id   Attribute identifier
 !! \param hdferr    \fortran_error
@@ -1888,7 +1888,7 @@ END SUBROUTINE h5aopen_by_name_f
 !! \brief Asynchronously opens an attribute for an object by object name and attribute name.
 !!
 !! \param loc_id    Location from which to find object to which attribute is attached
-!! \param obj_name  Object name either relative to loc_id, absolute from the file’s root group, or '.' (a dot)
+!! \param obj_name  Object name either relative to loc_id, absolute from the file's root group, or '.' (a dot)
 !! \param attr_name Attribute name
 !! \param attr_id   Attribute identifier
 !! \param es_id     \fortran_es_id

fortran/src/H5Gff.F90

@@ -1171,7 +1171,7 @@ END SUBROUTINE h5gget_info_f90
 !>
 !! \ingroup FH5G
 !!
-!! \brief Retrieves information about a group, according to the group’s position within an index.
+!! \brief Retrieves information about a group, according to the group's position within an index.
 !!
 !! \attention  \fortran_approved
 !!
@@ -1226,7 +1226,7 @@ END SUBROUTINE h5gget_info_by_idx_f03
 !>
 !! \ingroup FH5G
 !!
-!! \brief Asynchronously retrieves information about a group, according to the group’s position within an index.
+!! \brief Asynchronously retrieves information about a group, according to the group's position within an index.
 !!
 !! \param loc_id     Location identifier. The identifier may be that of a file, group, dataset, named datatype, or attribute.
 !! \param group_name Name of group containing group for which information is to be retrieved.
@@ -1285,7 +1285,7 @@ END SUBROUTINE h5gget_info_by_idx_async_f
 !>
 !! \ingroup FH5G
 !!
-!! \brief Retrieves information about a group, according to the group’s position within an index.
+!! \brief Retrieves information about a group, according to the group's position within an index.
 !!
 !! \attention  \fortran_obsolete. Both nlinks and max_corder can overflow.
 !!

fortran/src/H5Lf.c

@@ -150,8 +150,8 @@ h5lcreate_external_c(_fcd file_name, size_t_f *file_namelen, _fcd obj_name, size
  * OUTPUTS
  *
  *
- *  cset - indicates the character set used for link’s name.
- *  corder - specifies the link’s creation order position.
+ *  cset - indicates the character set used for link's name.
+ *  corder - specifies the link's creation order position.
  *  corder_valid - indicates whether the value in corder is valid.
  *  link_type -  specifies the link class:
  *     	                H5L_LINK_HARD_F      - Hard link
@@ -221,7 +221,7 @@ h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, int_
  *
  *  corder_valid - Indicates whether the creation order data is valid for this attribute
  *  corder - Is a positive integer containing the creation order of the attribute
- *  cset - Indicates the character set used for the attribute’s name
+ *  cset - Indicates the character set used for the attribute's name
  *  data_size - indicates the size, in the number of characters, of the attribute
  *
  * RETURNS

fortran/src/H5Lff.F90

@@ -830,8 +830,8 @@ END SUBROUTINE h5lexists_async_f
 !! \param link_loc_id File or group identifier.
 !! \param link_name   Name of the link for which information is being sought.
 !!                     NOTE: In C these are contained in the structure H5L_info_t
-!! \param cset         Indicates the character set used for link’s name.
-!! \param corder       Specifies the link’s creation order position.
+!! \param cset         Indicates the character set used for link's name.
+!! \param corder       Specifies the link's creation order position.
 !! \param f_corder_valid Indicates whether the value in corder is valid.
 !! \param link_type    Specifies the link class:
 !!                     \li H5L_TYPE_HARD_F     - Hard link
@@ -926,7 +926,7 @@ END SUBROUTINE h5lget_info_f
 !!                       \li H5L_TYPE_ERROR _F    - Error
 !! \param f_corder_valid Indicates whether the creation order data is valid for this attribute.
 !! \param corder         Is a positive integer containing the creation order of the attribute.
-!! \param cset           Indicates the character set used for the attribute’s name.
+!! \param cset           Indicates the character set used for the attribute's name.
 !! \param token          If the link is a hard link, token specifies the object token that the link points to.
 !! \param val_size       If the link is a symbolic link, val_size will be the length of the link value, e.g.,
 !!                       the length of the name of the pointed-to object with a null terminator.

fortran/src/H5Of.c

@@ -136,7 +136,7 @@ h5olink_c(hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen,
  *  Calls H5open_by_token
  * INPUTS
  *  loc_id - File or group identifier
- *  token  - Object’s token in the file
+ *  token  - Object's token in the file
  *
  * OUTPUTS
  *  obj_id  - Object identifier

fortran/src/H5Off.F90

@@ -404,7 +404,7 @@ END SUBROUTINE h5oclose_async_f
 !! \brief Opens an object using its token within an HDF5 file.
 !!
 !! \param loc_id File or group identifier.
-!! \param token  Object’s token in the file.
+!! \param token  Object's token in the file.
 !! \param obj_id Object identifier for the opened object.
 !! \param hdferr \fortran_error
 !!