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Sync develop branch changes March 4 - 6 to hdf5_1_14 branch #3

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Sync develop branch changes March 4 - 6 to hdf5_1_14 branch

Sync develop branch changes March 4 - 6 to hdf5_1_14 branch #3

Workflow file for this run

.github/workflows/cmake-ctest.yml at df1bdc3
name: hdf5 1.14 ctest runs
# Controls when the action will run. Triggers the workflow on a call
on:
workflow_call:
inputs:
file_base:
description: "The common base name of the source tarballs"
required: true
type: string
preset_name:
description: "The common base name of the preset configuration name to control the build"
required: true
type: string
permissions:
contents: read
# A workflow run is made up of one or more jobs that can run sequentially or
# in parallel
jobs:
build_and_test_win:
# Windows w/ MSVC + CMake
#
name: "Windows MSVC CTest"
runs-on: windows-latest
steps:
- name: Install Dependencies (Windows)
run: choco install ninja
- name: Install Dependencies
uses: ssciwr/doxygen-install@v1
with:
version: "1.10.0"
- name: Enable Developer Command Prompt
uses: ilammy/[email protected]
- name: Set file base name (Windows)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
shell: bash
# Get files created by release script
- name: Get zip-tarball (Windows)
uses: actions/download-artifact@c850b930e6ba138125429b7e5c93fc707a7f8427 # v4.1.4
with:
name: zip-tarball
path: ${{ github.workspace }}
- name: using powershell
shell: pwsh
run: Get-Location
- name: List files for the space (Windows)
run: |
Get-ChildItem -Path ${{ github.workspace }}
Get-ChildItem -Path ${{ runner.workspace }}
shell: pwsh
- name: Uncompress source (Windows)
working-directory: ${{ github.workspace }}
run: 7z x ${{ steps.set-file-base.outputs.FILE_BASE }}.zip
shell: bash
- name: Run ctest (Windows)
run: |
cd "${{ runner.workspace }}/hdf5/hdfsrc"
cmake --workflow --preset=${{ inputs.preset_name }}-MSVC --fresh
shell: bash
- name: Publish binary (Windows)
id: publish-ctest-binary
run: |
mkdir "${{ runner.workspace }}/build114"
mkdir "${{ runner.workspace }}/build114/hdf5"
Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/build/${{ inputs.preset_name }}-MSVC/README.md -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-MSVC/* -Destination ${{ runner.workspace}}/build114/hdf5/ -Include *.zip
cd "${{ runner.workspace }}/build114"
7z a -tzip ${{ steps.set-file-base.outputs.FILE_BASE }}-win-vs2022_cl.zip hdf5
shell: pwsh
- name: List files in the space (Windows)
run: |
Get-ChildItem -Path ${{ github.workspace }}
Get-ChildItem -Path ${{ runner.workspace }}
shell: pwsh
# Save files created by ctest script
- name: Save published binary (Windows)
uses: actions/upload-artifact@v4
with:
name: zip-vs2022_cl-binary
path: ${{ runner.workspace }}/build114/${{ steps.set-file-base.outputs.FILE_BASE }}-win-vs2022_cl.zip
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
build_and_test_linux:
# Linux (Ubuntu) w/ gcc + CMake
#
name: "Ubuntu gcc CMake"
runs-on: ubuntu-latest
steps:
- name: Install CMake Dependencies (Linux)
run: sudo apt-get install ninja-build graphviz
- name: Install Dependencies
uses: ssciwr/doxygen-install@v1
with:
version: "1.10.0"
- name: Set file base name (Linux)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
# Get files created by release script
- name: Get tgz-tarball (Linux)
uses: actions/download-artifact@c850b930e6ba138125429b7e5c93fc707a7f8427 # v4.1.4
with:
name: tgz-tarball
path: ${{ github.workspace }}
- name: List files for the space (Linux)
run: |
ls -l ${{ github.workspace }}
ls ${{ runner.workspace }}
- name: Uncompress source (Linux)
run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
- name: Run ctest (Linux)
run: |
cd "${{ runner.workspace }}/hdf5/hdfsrc"
cmake --workflow --preset=${{ inputs.preset_name }}-GNUC --fresh
shell: bash
- name: Publish binary (Linux)
id: publish-ctest-binary
run: |
mkdir "${{ runner.workspace }}/build114"
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-GNUC/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-GNUC/*.tar.gz ${{ runner.workspace }}/build114/hdf5
cd "${{ runner.workspace }}/build114"
tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc.tar.gz hdf5
shell: bash
- name: Publish deb binary (Linux)
id: publish-ctest-deb-binary
run: |
mkdir "${{ runner.workspace }}/builddeb"
mkdir "${{ runner.workspace }}/builddeb/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/builddeb/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/builddeb/hdf5
cp ${{ runner.workspace }}/hdf5/build/${{ inputs.preset_name }}-GNUC/README.md ${{ runner.workspace }}/builddeb/hdf5
cp ${{ runner.workspace }}/hdf5/build/${{ inputs.preset_name }}-GNUC/*.deb ${{ runner.workspace }}/builddeb/hdf5
cd "${{ runner.workspace }}/builddeb"
tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc.deb hdf5
shell: bash
- name: Publish rpm binary (Linux)
id: publish-ctest-rpm-binary
run: |
mkdir "${{ runner.workspace }}/buildrpm"
mkdir "${{ runner.workspace }}/buildrpm/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/buildrpm/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/buildrpm/hdf5
cp ${{ runner.workspace }}/hdf5/build/${{ inputs.preset_name }}-GNUC/README.md ${{ runner.workspace }}/buildrpm/hdf5
cp ${{ runner.workspace }}/hdf5/build/${{ inputs.preset_name }}-GNUC/*.rpm ${{ runner.workspace }}/buildrpm/hdf5
cd "${{ runner.workspace }}/buildrpm"
tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc.rpm hdf5
shell: bash
- name: List files in the space (Linux)
run: |
ls ${{ github.workspace }}
ls -l ${{ runner.workspace }}
# Save files created by ctest script
- name: Save published binary (Linux)
uses: actions/upload-artifact@v4
with:
name: tgz-ubuntu-2204_gcc-binary
path: ${{ runner.workspace }}/build114/${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc.tar.gz
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
# Save files created by ctest script
- name: Save published binary deb (Linux)
uses: actions/upload-artifact@v4
with:
name: deb-ubuntu-2204_gcc-binary
path: ${{ runner.workspace }}/builddeb/${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc.deb
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
# Save files created by ctest script
- name: Save published binary rpm (Linux)
uses: actions/upload-artifact@v4
with:
name: rpm-ubuntu-2204_gcc-binary
path: ${{ runner.workspace }}/buildrpm/${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc.rpm
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
# Save doxygen files created by ctest script
- name: Save published doxygen (Linux)
uses: actions/upload-artifact@v4
with:
name: docs-doxygen
path: ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-GNUC/hdf5lib_docs/html
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
build_and_test_mac:
# MacOS w/ Clang + CMake
#
name: "MacOS Clang CMake"
runs-on: macos-13
steps:
- name: Install Dependencies (MacOS)
run: brew install ninja
- name: Install Dependencies
uses: ssciwr/doxygen-install@v1
with:
version: "1.10.0"
- name: Set file base name (MacOS)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
# Get files created by release script
- name: Get tgz-tarball (MacOS)
uses: actions/download-artifact@c850b930e6ba138125429b7e5c93fc707a7f8427 # v4.1.4
with:
name: tgz-tarball
path: ${{ github.workspace }}
- name: List files for the space (MacOS)
run: |
ls ${{ github.workspace }}
ls ${{ runner.workspace }}
- name: Uncompress source (MacOS)
run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
# symlinks the compiler executables to a common location
- name: Setup GNU Fortran
uses: fortran-lang/setup-fortran@v1
id: setup-fortran
with:
compiler: gcc
version: 12
- name: Run ctest (MacOS)
id: run-ctest
run: |
cd "${{ runner.workspace }}/hdf5/hdfsrc"
cmake --workflow --preset=${{ inputs.preset_name }}-OSX-Clang --fresh
shell: bash
- name: Publish binary (MacOS)
id: publish-ctest-binary
run: |
mkdir "${{ runner.workspace }}/build114"
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Clang/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Clang/*.tar.gz ${{ runner.workspace }}/build114/hdf5
cd "${{ runner.workspace }}/build114"
tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-osx12.tar.gz hdf5
shell: bash
- name: List files in the space (MacOS)
run: |
ls ${{ github.workspace }}
ls -l ${{ runner.workspace }}
# Save files created by ctest script
- name: Save published binary (MacOS)
uses: actions/upload-artifact@v4
with:
name: tgz-osx12-binary
path: ${{ runner.workspace }}/build114/${{ steps.set-file-base.outputs.FILE_BASE }}-osx12.tar.gz
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
build_and_test_S3_linux:
# Linux S3 (Ubuntu) w/ gcc + CMake
#
name: "Ubuntu gcc CMake S3"
runs-on: ubuntu-latest
steps:
- name: Install CMake Dependencies (Linux S3)
run: |
sudo apt-get install ninja-build doxygen graphviz
sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
- name: Set file base name (Linux S3)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
# Get files created by release script
- name: Get tgz-tarball (Linux S3)
uses: actions/download-artifact@c850b930e6ba138125429b7e5c93fc707a7f8427 # v4.1.4
with:
name: tgz-tarball
path: ${{ github.workspace }}
- name: List files for the space (Linux S3)
run: |
ls -l ${{ github.workspace }}
ls ${{ runner.workspace }}
- name: Uncompress source (Linux S3)
run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
u - name: Run ctest (Linux S3)
run: |

Check failure on line 328 in .github/workflows/cmake-ctest.yml

View workflow run for this annotation

GitHub Actions / .github/workflows/cmake-ctest.yml

Invalid workflow file 

You have an error in your yaml syntax on line 328
cd "${{ runner.workspace }}/hdf5/hdfsrc"
cmake --workflow --preset=${{ inputs.preset_name }}-GNUC-S3 --fresh
shell: bash
- name: Publish binary (Linux S3)
id: publish-ctest-binary
run: |
mkdir "${{ runner.workspace }}/build114"
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-GNUC-S3/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-GNUC-S3/*.tar.gz ${{ runner.workspace }}/build114/hdf5
cd "${{ runner.workspace }}/build114"
tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc_s3.tar.gz hdf5
shell: bash
- name: List files in the space (Linux S3)
run: |
ls ${{ github.workspace }}
ls -l ${{ runner.workspace }}
# Save files created by ctest script
- name: Save published binary (Linux S3)
uses: actions/upload-artifact@v4
with:
name: tgz-ubuntu-2204_gcc_s3-binary
path: ${{ runner.workspace }}/build114/${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_gcc_s3.tar.gz
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
####### intel builds
build_and_test_win_intel:
# Windows w/ OneAPI + CMake
#
name: "Windows Intel CTest"
runs-on: windows-latest
steps:
- name: Install Dependencies (Windows_intel)
run: choco install ninja
- name: add oneAPI to env
uses: fortran-lang/setup-fortran@v1
id: setup-fortran
with:
compiler: intel
version: '2023.2'
- name: Enable Developer Command Prompt
uses: ilammy/[email protected]
- name: Set file base name (Windows_intel)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
shell: bash
# Get files created by release script
- name: Get zip-tarball (Windows_intel)
uses: actions/download-artifact@c850b930e6ba138125429b7e5c93fc707a7f8427 # v4.1.4
with:
name: zip-tarball
path: ${{ github.workspace }}
- name: using powershell
shell: pwsh
run: Get-Location
- name: List files for the space (Windows_intel)
run: |
Get-ChildItem -Path ${{ github.workspace }}
Get-ChildItem -Path ${{ runner.workspace }}
shell: pwsh
- name: Uncompress source (Windows_intel)
working-directory: ${{ github.workspace }}
run: 7z x ${{ steps.set-file-base.outputs.FILE_BASE }}.zip
shell: bash
- name: Run ctest (Windows_intel) with oneapi
env:
FC: ${{ steps.setup-fortran.outputs.fc }}
CC: ${{ steps.setup-fortran.outputs.cc }}
CXX: ${{ steps.setup-fortran.outputs.cxx }}
run: |
cd "${{ runner.workspace }}/hdf5/hdfsrc"
cmake --workflow --preset=${{ inputs.preset_name }}-win-Intel --fresh
shell: pwsh
- name: Publish binary (Windows_intel)
id: publish-ctest-binary
run: |
mkdir "${{ runner.workspace }}/build114"
mkdir "${{ runner.workspace }}/build114/hdf5"
Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Intel/README.md -Destination ${{ runner.workspace }}/build114/hdf5/
Copy-Item -Path ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Intel/* -Destination ${{ runner.workspace }}/build114/hdf5/ -Include *.zip
cd "${{ runner.workspace }}/build114"
7z a -tzip ${{ steps.set-file-base.outputs.FILE_BASE }}-win-vs2022_intel.zip hdf5
shell: pwsh
- name: List files in the space (Windows_intel)
run: |
Get-ChildItem -Path ${{ github.workspace }}
Get-ChildItem -Path ${{ runner.workspace }}
shell: pwsh
# Save files created by ctest script
- name: Save published binary (Windows_intel)
uses: actions/upload-artifact@v4
with:
name: zip-vs2022_intel-binary
path: ${{ runner.workspace }}/build114/${{ steps.set-file-base.outputs.FILE_BASE }}-win-vs2022_intel.zip
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
build_and_test_linux_intel:
# Linux (Ubuntu) w/ OneAPI + CMake
#
name: "Ubuntu Intel CMake"
runs-on: ubuntu-latest
steps:
- name: Install CMake Dependencies (Linux_intel)
run: sudo apt-get install ninja-build graphviz
- name: Install Dependencies
uses: ssciwr/doxygen-install@v1
with:
version: "1.10.0"
- name: add oneAPI to env
uses: fortran-lang/setup-fortran@v1
id: setup-fortran
with:
compiler: intel
version: '2023.2'
- name: Set file base name (Linux_intel)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
# Get files created by release script
- name: Get tgz-tarball (Linux_intel)
uses: actions/download-artifact@c850b930e6ba138125429b7e5c93fc707a7f8427 # v4.1.4
with:
name: tgz-tarball
path: ${{ github.workspace }}
- name: List files for the space (Linux_intel)
run: |
ls -l ${{ github.workspace }}
ls ${{ runner.workspace }}
- name: Uncompress source (Linux_intel)
run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
- name: Run ctest (Linux_intel)
env:
FC: ${{ steps.setup-fortran.outputs.fc }}
CC: ${{ steps.setup-fortran.outputs.cc }}
CXX: ${{ steps.setup-fortran.outputs.cxx }}
run: |
cd "${{ runner.workspace }}/hdf5/hdfsrc"
cmake --workflow --preset=${{ inputs.preset_name }}-Intel --fresh
shell: bash
- name: Publish binary (Linux_intel)
id: publish-ctest-binary
run: |
mkdir "${{ runner.workspace }}/build114"
mkdir "${{ runner.workspace }}/build114/hdf5"
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Intel/README.md ${{ runner.workspace }}/build114/hdf5
cp ${{ runner.workspace }}/hdf5/build114/${{ inputs.preset_name }}-Intel/*.tar.gz ${{ runner.workspace }}/build114/hdf5
cd "${{ runner.workspace }}/build114"
tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_intel.tar.gz hdf5
shell: bash
- name: List files in the space (Linux_intel)
run: |
ls ${{ github.workspace }}
ls -l ${{ runner.workspace }}
# Save files created by ctest script
- name: Save published binary (Linux_intel)
uses: actions/upload-artifact@v4
with:
name: tgz-ubuntu-2204_intel-binary
path: ${{ runner.workspace }}/build114/${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204_intel.tar.gz
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`