ci: verify REUSE pipeline configuration

docs: add license and copyright headers to files docs: add REUSE badge to README ci: integrate REUSE lint in CI/CD pipeline
GenomicDataInfrastructure · Jun 20, 2024 · 5b81f18 · 5b81f18
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diff --git a/.coveragerc b/.coveragerc
@@ -1,3 +1,9 @@
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
+
 [report]
 omit =
     */site-packages/*

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -1,7 +1,6 @@
-
-# SPDX-FileCopyrightText: 2024 Stichting Health-RI.
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
 #
-# SPDX-License-Identifier: Apache-2.0
+# SPDX-License-Identifier: AGPL-3.0-only
 
 name: Publish and Deploy main
 

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 name: Rus Tests
 
 on: push

diff --git a/.gitignore b/.gitignore
@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 .ropeproject
 node_modules
 bower_components

diff --git a/LICENSES/AGPL-3.0-only.txt b/LICENSES/AGPL-3.0-only.txt
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -1,6 +1,6 @@
-# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+# SPDX-FileCopyrightText: 2023 Civity
 #
-# SPDX-License-Identifier: Apache-2.0
+# SPDX-License-Identifier: AGPL-3.0-only
 
 include README.rst
 include LICENSE

diff --git a/README.md b/README.md
@@ -1,10 +1,13 @@
 <!--
-SPDX-FileCopyrightText: Stichting Health-RI
+SPDX-FileCopyrightText: 2023 Civity 
+SPDX-FileContributor: 2024 Stichting Health-RI
 
-SPDX-License-Identifier: CC-BY-4.0
+SPDX-License-Identifier: AGPL-3.0-only
 -->
 
-[![Tests](https://github.com/CivityNL/ckanext-fairdatapoint/workflows/Tests/badge.svg?branch=main)](https://github.com/CivityNL/ckanext-fairdatapoint/actions)
+
+[![REUSE status](https://api.reuse.software/badge/github.com/GenomicDataInfrastructure/gdi-userportal-ckanext-fairdatapoint)](https://api.reuse.software/info/github.com/GenomicDataInfrastructure/gdi-userportal-ckanext-fairdatapoint)
+[![Tests](https://github.com/GenomicDataInfrastructure/gdi-userportal-ckanext-fairdatapoint/actions/workflows/test.yml/badge.svg)](https://github.com/GenomicDataInfrastructure/gdi-userportal-ckanext-fairdatapoint/actions/workflows/test.yml)
 
 # ckanext-fairdatapoint
 

diff --git a/ckanext/__init__.py b/ckanext/__init__.py
@@ -1,7 +1,6 @@
 # SPDX-FileCopyrightText: 2023 Civity
-# SPDX-FileContributor: Stichting Health-RI
 #
-# SPDX-License-Identifier: Apache-2.0
+# SPDX-License-Identifier: AGPL-3.0-only
 
 # encoding: utf-8
 

diff --git a/ckanext/fairdatapoint/assets/webassets.yml b/ckanext/fairdatapoint/assets/webassets.yml
diff --git a/ckanext/fairdatapoint/dataset.json b/ckanext/fairdatapoint/dataset.json
diff --git a/ckanext/fairdatapoint/fair_data_point_main.py b/ckanext/fairdatapoint/fair_data_point_main.py
@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 # coding: utf8
 
 from ckanext.fairdatapoint.harvesters.domain.fair_data_point_record_provider import FairDataPointRecordProvider

diff --git a/ckanext/fairdatapoint/harvesters/__init__.py b/ckanext/fairdatapoint/harvesters/__init__.py
@@ -1 +1,6 @@
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 from ckanext.fairdatapoint.harvesters.fair_data_point_civity_harvester import FairDataPointCivityHarvester
diff --git a/ckanext/fairdatapoint/harvesters/civity_harvester.py b/ckanext/fairdatapoint/harvesters/civity_harvester.py
@@ -1,6 +1,7 @@
-# File original (C) Civity
-# File modified by Stichting Health-RI in January 2024 to remove unused code
-# All changes are © Stichting Health-RI and are licensed under the AGPLv3 license
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
 
 import cgitb
 import json

diff --git a/ckanext/fairdatapoint/harvesters/domain/fair_data_point.py b/ckanext/fairdatapoint/harvesters/domain/fair_data_point.py
@@ -1,6 +1,7 @@
-# File original (C) Civity
-# File modified by Stichting Health-RI in January 2024 to remove a debugging graph-print function
-# All changes are © Stichting Health-RI and are licensed under the AGPLv3 license
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
 
 import logging
 import requests

diff --git a/ckanext/fairdatapoint/harvesters/domain/fair_data_point_record_provider.py b/ckanext/fairdatapoint/harvesters/domain/fair_data_point_record_provider.py
@@ -1,7 +1,7 @@
-# File original (C) Civity
-# File modified by Stichting Health-RI in January 2024 to remove custom exception and dependency on
-#  Civity-specific record provider
-# All changes are © Stichting Health-RI and are licensed under the AGPLv3 license
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
 
 
 import logging

diff --git a/ckanext/fairdatapoint/harvesters/domain/fair_data_point_record_to_package_converter.py b/ckanext/fairdatapoint/harvesters/domain/fair_data_point_record_to_package_converter.py
@@ -1,7 +1,7 @@
-# File original (C) Civity
-# File modified by Stichting Health-RI in January 2024 to remove custom exception and dependency on
-#  Civity-specific record provider
-# All changes are © Stichting Health-RI and are licensed under the AGPLv3 license
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
 
 import logging
 

diff --git a/ckanext/fairdatapoint/harvesters/domain/identifier.py b/ckanext/fairdatapoint/harvesters/domain/identifier.py
@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 SEPARATOR = ';'
 KEY_VALUE_SEPARATOR = '='
 

diff --git a/ckanext/fairdatapoint/harvesters/fair_data_point_civity_harvester.py b/ckanext/fairdatapoint/harvesters/fair_data_point_civity_harvester.py
@@ -1,6 +1,9 @@
-# File original (C) Civity
-# File modified by Stichting Health-RI to allow for a non-custom exception
-# All changes are © Stichting Health-RI and are licensed under the AGPLv3 license
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
+
 from ckanext.fairdatapoint.harvesters.civity_harvester import CivityHarvester
 from ckanext.fairdatapoint.harvesters.domain.fair_data_point_record_provider import FairDataPointRecordProvider
 from ckanext.fairdatapoint.harvesters.domain.fair_data_point_record_to_package_converter import \

diff --git a/ckanext/fairdatapoint/mapping.json b/ckanext/fairdatapoint/mapping.json
diff --git a/ckanext/fairdatapoint/plugin.py b/ckanext/fairdatapoint/plugin.py
@@ -1,3 +1,9 @@
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
+
 import ckan.plugins as plugins
 import ckan.plugins.toolkit as toolkit
 

diff --git a/ckanext/fairdatapoint/processors.py b/ckanext/fairdatapoint/processors.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
 #
-# SPDX-License-Identifier: Apache-2.0
+# SPDX-License-Identifier: AGPL-3.0-only
 
 from rdflib import RDF, DCAT
 from rdflib.term import Node

diff --git a/ckanext/fairdatapoint/profiles.py b/ckanext/fairdatapoint/profiles.py
@@ -1,7 +1,7 @@
-# SPDX-FileCopyrightText: 2024 Civity
-# SPDX-FileContributor: Stichting Health-RI
+# SPDX-FileCopyrightText: 2023 Civity
+# SPDX-FileContributor: 2024 Stichting Health-RI
 #
-# SPDX-License-Identifier: Apache-2.0
+# SPDX-License-Identifier: AGPL-3.0-only
 
 from datetime import datetime, timezone
 import re

diff --git a/ckanext/fairdatapoint/template.json b/ckanext/fairdatapoint/template.json
diff --git a/ckanext/fairdatapoint/tests/__init__.py b/ckanext/fairdatapoint/tests/__init__.py
@@ -0,0 +1,3 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only AND Apache-2.0
diff --git a/ckanext/fairdatapoint/tests/test_data/Project_27866022694497978.ttl b/ckanext/fairdatapoint/tests/test_data/Project_27866022694497978.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix foaf: <http://xmlns.com/foaf/0.1/> .

diff --git a/ckanext/fairdatapoint/tests/test_data/Project_27866022694497978_out.ttl b/ckanext/fairdatapoint/tests/test_data/Project_27866022694497978_out.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix v: <http://www.w3.org/2006/vcard/ns#> .

diff --git a/ckanext/fairdatapoint/tests/test_data/contact_point_multiple_cards.ttl b/ckanext/fairdatapoint/tests/test_data/contact_point_multiple_cards.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix foaf: <http://xmlns.com/foaf/0.1/> .

diff --git a/ckanext/fairdatapoint/tests/test_data/contact_point_multiple_urls.ttl b/ckanext/fairdatapoint/tests/test_data/contact_point_multiple_urls.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix foaf: <http://xmlns.com/foaf/0.1/> .

diff --git a/ckanext/fairdatapoint/tests/test_data/contact_point_url.ttl b/ckanext/fairdatapoint/tests/test_data/contact_point_url.ttl
@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
+
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix foaf: <http://xmlns.com/foaf/0.1/> .

diff --git a/ckanext/fairdatapoint/tests/test_data/contact_point_vcard.ttl b/ckanext/fairdatapoint/tests/test_data/contact_point_vcard.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix foaf: <http://xmlns.com/foaf/0.1/> .

diff --git a/ckanext/fairdatapoint/tests/test_data/dataset_898ca4b8-197b-4d40-bc81-d9cd88197670.ttl b/ckanext/fairdatapoint/tests/test_data/dataset_898ca4b8-197b-4d40-bc81-d9cd88197670.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix foaf: <http://xmlns.com/foaf/0.1/> .

diff --git a/ckanext/fairdatapoint/tests/test_data/dataset_cbioportal.ttl b/ckanext/fairdatapoint/tests/test_data/dataset_cbioportal.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix ldp: <http://www.w3.org/ns/ldp#> .

diff --git a/ckanext/fairdatapoint/tests/test_data/dataset_d7129d28-b72a-437f-8db0-4f0258dd3c25.ttl b/ckanext/fairdatapoint/tests/test_data/dataset_d7129d28-b72a-437f-8db0-4f0258dd3c25.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix ldp: <http://www.w3.org/ns/ldp#> .

diff --git a/ckanext/fairdatapoint/tests/test_data/dataset_d7129d28-b72a-437f-8db0-4f0258dd3c25_out.ttl b/ckanext/fairdatapoint/tests/test_data/dataset_d7129d28-b72a-437f-8db0-4f0258dd3c25_out.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix ldp: <http://www.w3.org/ns/ldp#> .

diff --git a/ckanext/fairdatapoint/tests/test_data/distribution_f9b9dff8-a039-4ca2-be9b-da72a61e3bac.ttl b/ckanext/fairdatapoint/tests/test_data/distribution_f9b9dff8-a039-4ca2-be9b-da72a61e3bac.ttl
@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Stichting Health-RI
+#
+# SPDX-License-Identifier: AGPL-3.0-only
+
 @prefix dcat: <http://www.w3.org/ns/dcat#> .
 @prefix dcterms: <http://purl.org/dc/terms/> .
 @prefix ns1: <http://semanticscience.org/resource/> .