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[update docs] release 1.16.11
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cmdcolin committed Mar 11, 2021
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2 changes: 1 addition & 1 deletion package.json
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{
"name": "@gmod/jbrowse",
"main": "browser/main.js",
"version": "1.16.11-alpha.0",
"version": "1.16.11",
"description": "JBrowse - client-side genome browser",
"repository": "https://github.com/GMOD/jbrowse.git",
"scripts": {
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2 changes: 1 addition & 1 deletion release-notes.md
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{{$NEXT}}
# Release 1.16.11 2021-03-11 23:10:58 UTC

## Minor improvements

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2 changes: 1 addition & 1 deletion src/JBrowse/package.json
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{
"name": "JBrowse",
"version": "1.16.11-alpha.0",
"version": "1.16.11",
"copyright":"© 2007-2017 The Evolutionary Software Foundation",
"main": "main",
"dependencies": {
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49 changes: 49 additions & 0 deletions website/blog/2021-03-11-jbrowse-1-16-11.md
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---
layout: post
title: JBrowse 1.16.11 maintenance release
date: 2021-03-11
tags: ["News","Software releases"]
---

Hi all,

This is a small maintanence release that fixes an issue that was seen with very
long CRAM reads and an issue that was seen with some users installing with
setup.sh producing an error. Thanks to everyone for their bug reports and
requests and for being patient with jbrowse 1 releases as we speed ahead with
jbrowse 2!

* [JBrowse-1.16.11.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11.zip) - minified release
* [JBrowse-1.16.11-dev.zip](https://github.com/GMOD/jbrowse/archive/1.16.11-release.zip) - use this if you modify jbrowse source code or use plugins
* [JBrowse-1.16.11-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-win32-x64.zip)
* [JBrowse-1.16.11-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-linux-x64.zip)
* [JBrowse-1.16.11-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-darwin-x64.zip)




## Minor improvements

- Add optional track label field for RegexSequenceSearch (<a href="https://github.com/gmod/jbrowse/issues/1553">issue #1553</a>,
<a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/Rhinogradentia">@Rhinogradentia</a>)

- Bump <a href="https://github.com/gmod">@gmod</a>/tabix for textdecoder speedup for very large tabix files
(<a href="https://github.com/arpanda">@arpanda</a>, <a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/gmod/jbrowse/pull/1569">issue #1569</a>)

- Increase GFF3Tabix chunkSizeLimit to avoid it being hit on relatively small
files

## Bug fixes

- Bump <a href="https://github.com/gmod">@gmod</a>/cram for fix for ultra long reads (https://github.com/GMOD/cram-js/pull/84)

- Fix issue that some users were seeing with "Commit hash required" when
running setup.sh. Thanks to <a href="https://github.com/GFJHogue">@GFJHogue</a> and <a href="https://github.com/hans-vg">@hans-vg</a> for reporting (<a href="https://github.com/gmod/jbrowse/issues/1555">issue #1555</a>)

- Bump <a href="https://github.com/gmod">@gmod</a>/bam which fixes some unsigned BAM tags being reported with a
negative number

- Bump <a href="https://github.com/gmod">@gmod</a>/bam and <a href="https://github.com/gmod">@gmod</a>/tabix for and some fixes with reg2bins and chunk
merging for large chromosomes e.g. wheat. Thanks to <a href="https://github.com/jrobinso">@jrobinso</a> for reporting
(https://github.com/GMOD/tabix-js/issues/118)

2 changes: 1 addition & 1 deletion website/siteConfig.js
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};

const v = {
"version": "1.16.10"
"version": "1.16.11"
};
const siteVariables = {
version: v.version,
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