Factoring hysteresis model out of TableRelativePermeabilityHysteresis
#494
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| name: GEOS CI | |
| on: pull_request | |
| # Cancels in-progress workflows for a PR when updated | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| GEOSX_TPL_TAG: 224-965 | |
| jobs: | |
| # Matrix jobs will be cancelled if PR is a draft. | |
| # PR status must be "Open" to run CI. | |
| check_pull_request_is_not_a_draft: | |
| # We use the most recent ubuntu distribution available in Github Actions to ensure maximum support of google cloud's sdk. | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Check that the PR is not a draft (cancel rest of jobs otherwise) | |
| run: | | |
| echo "Is PR a draft?" | |
| echo ${{ toJSON(github.event.pull_request.draft) }} | |
| if [[ ${{ toJSON(github.event.pull_request.draft) }} == true ]]; then "false" ; else "true"; fi | |
| # PR must be assigned to be merged. | |
| # This job will fail if this is not the case. | |
| check_pull_request_is_assigned: | |
| needs: [check_pull_request_is_not_a_draft] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| # Assignee ID will be null if PR is not assigned | |
| - name: Check that the PR is assigned | |
| run: | | |
| id=$(curl -H "Accept: application/vnd.github+json" \ | |
| https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.number }} \ | |
| | jq '.assignee.id') | |
| echo "Is PR Assigned? (Check for Assignee ID)" | |
| echo $id | |
| if [[ $id != null ]]; then "true" ; else "false"; fi | |
| check_submodules: | |
| needs: [check_pull_request_is_not_a_draft] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| # The integrated test submodule repository contains large data (using git lfs). | |
| # To save time (and money) we do not let Github Actions automatically clone all our (lfs) subrepositories and do it by hand. | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| # Let script update submodules; Github Actions submodule history causes error | |
| submodules: false | |
| lfs: false | |
| - name: Check that submodules are up to date | |
| run: "scripts/test_submodule_updated.sh" | |
| code_style: | |
| needs: [check_pull_request_is_not_a_draft] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| lfs: false | |
| - name: Check style | |
| env: | |
| DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9 | |
| CMAKE_BUILD_TYPE: Release | |
| BUILD_AND_TEST_ARGS: --test-code-style | |
| run: ./scripts/ci_build_and_test.sh | |
| documentation: | |
| needs: [check_pull_request_is_not_a_draft] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| lfs: false | |
| - name: Check documentation | |
| env: | |
| DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9 | |
| CMAKE_BUILD_TYPE: Release | |
| BUILD_AND_TEST_ARGS: --test-documentation | |
| run: ./scripts/ci_build_and_test.sh | |
| linux_builds: | |
| name: ${{ matrix.name }} | |
| # runs-on: ubuntu-22.04 | |
| runs-on: ${{ matrix.os }} | |
| needs: [check_pull_request_is_not_a_draft] | |
| strategy: | |
| # In-progress jobs will not be cancelled if there is a failure | |
| fail-fast : false | |
| matrix: | |
| include: | |
| - name: Ubuntu CUDA debug (20.04, clang 10.0.0 + gcc 9.4.0, open-mpi 4.0.3, cuda-11.2.152) | |
| DOCKER_REPOSITORY: geosx/ubuntu20.04-clang10.0.0-cuda11.2.152 | |
| OS: Runner_4core_16GB | |
| CMAKE_BUILD_TYPE: Debug | |
| BUILD_AND_TEST_ARGS: "--disable-unit-tests --build-exe-only --disable-schema-deployment" | |
| ENABLE_HYPRE: ON | |
| ENABLE_HYPRE_DEVICE: CUDA | |
| ENABLE_TRILINOS: OFF | |
| - name: Ubuntu CUDA (20.04, clang 10.0.0 + gcc 9.4.0, open-mpi 4.0.3, cuda-11.2.152) | |
| DOCKER_REPOSITORY: geosx/ubuntu20.04-clang10.0.0-cuda11.2.152 | |
| # OS: Runner_8core_32GB | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| BUILD_AND_TEST_ARGS: "--disable-unit-tests --disable-schema-deployment" | |
| ENABLE_HYPRE: ON | |
| ENABLE_HYPRE_DEVICE: CUDA | |
| ENABLE_TRILINOS: OFF | |
| - name: Centos (7.7, gcc 8.3.1, open-mpi 1.10.7, cuda 11.8.0) | |
| DOCKER_REPOSITORY: geosx/centos7.7-gcc8.3.1-cuda11.8.0 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| BUILD_AND_TEST_ARGS: "--disable-unit-tests --disable-schema-deployment" | |
| - name: Ubuntu (20.04, gcc 9.3.0, open-mpi 4.0.3) | |
| DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| - name: Ubuntu debug (20.04, gcc 10.3.0, open-mpi 4.0.3) | |
| DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc10 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Debug | |
| - name: Ubuntu (20.04, gcc 10.3.0, open-mpi 4.0.3) | |
| DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc10 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| # Matrix jobs that deploy to Google Cloud | |
| - name: Pecan GPU (centos 7.7, gcc 8.2.0, open-mpi 4.0.1, mkl 2019.5, cuda 11.5.119) | |
| DOCKER_REPOSITORY: geosx/pecan-gpu-gcc8.2.0-openmpi4.0.1-mkl2019.5-cuda11.5.119 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| BUILD_AND_TEST_ARGS: "--build-exe-only --disable-unit-tests --disable-schema-deployment" | |
| HOST_CONFIG: host-configs/TOTAL/pecan-GPU.cmake | |
| GCP_BUCKET: geosx/Pecan-GPU | |
| - name: Pecan CPU (centos 7.7, gcc 8.2.0, open-mpi 4.0.1, mkl 2019.5) | |
| DOCKER_REPOSITORY: geosx/pecan-cpu-gcc8.2.0-openmpi4.0.1-mkl2019.5 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| HOST_CONFIG: host-configs/TOTAL/pecan-CPU.cmake | |
| GCP_BUCKET: geosx/Pecan-CPU | |
| - name: Pangea 2 (centos 7.6, gcc 8.3.0, open-mpi 2.1.5, mkl 2019.3) | |
| DOCKER_REPOSITORY: geosx/pangea2-gcc8.3.0-openmpi2.1.5-mkl2019.3 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| GCP_BUCKET: geosx/Pangea2 | |
| ENABLE_HYPRE: ON | |
| ENABLE_TRILINOS: OFF | |
| - name: Sherlock CPU (centos 7.9.2009, gcc 10.1.0, open-mpi 4.1.2, openblas 0.3.10) | |
| DOCKER_REPOSITORY: geosx/sherlock-gcc10.1.0-openmpi4.1.2-openblas0.3.10-zlib1.2.11 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| HOST_CONFIG: host-configs/Stanford/sherlock-gcc10-ompi4.1.2-openblas0.3.10.cmake | |
| GCP_BUCKET: geosx/Sherlock-CPU | |
| ENABLE_HYPRE: ON | |
| ENABLE_TRILINOS: OFF | |
| - name: Ubuntu (22.04, gcc 11.2.0, open-mpi 4.1.2) | |
| DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc11 | |
| OS: ubuntu-22.04 | |
| CMAKE_BUILD_TYPE: Release | |
| GCP_BUCKET: geosx/ubuntu22.04-gcc11 | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| lfs: false | |
| - id: 'auth' | |
| if: matrix.GCP_BUCKET | |
| uses: 'google-github-actions/auth@v1' | |
| with: | |
| credentials_json: '${{ secrets.GOOGLE_CLOUD_GCP }}' | |
| - name: 'Set up Cloud SDK' | |
| if: matrix.GCP_BUCKET | |
| uses: 'google-github-actions/setup-gcloud@v1' | |
| with: | |
| version: '>= 363.0.0' | |
| - name: Print environment | |
| run: printenv | |
| # Build and test only | |
| # Builds only the geosx executable (timeout when building tests) | |
| - name: Build and test | |
| if: ${{ !(matrix.GCP_BUCKET) }} | |
| env: | |
| DOCKER_REPOSITORY: ${{ matrix.DOCKER_REPOSITORY }} | |
| CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }} | |
| BUILD_AND_TEST_ARGS: ${{ matrix.BUILD_AND_TEST_ARGS }} | |
| ENABLE_HYPRE: ${{ matrix.ENABLE_HYPRE }} | |
| ENABLE_HYPRE_DEVICE: ${{ matrix.ENABLE_HYPRE_DEVICE }} | |
| ENABLE_TRILINOS: ${{ matrix.ENABLE_TRILINOS }} | |
| run: ./scripts/ci_build_and_test.sh | |
| # Build, test, uploads GEOSX and its TPL to GCP/GCS using gcloud CLI | |
| - name: Build and test and deploy | |
| if: matrix.GCP_BUCKET | |
| env: | |
| DOCKER_REPOSITORY: ${{ matrix.DOCKER_REPOSITORY }} | |
| CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }} | |
| BUILD_AND_TEST_ARGS: ${{ matrix.BUILD_AND_TEST_ARGS }} | |
| HOST_CONFIG: ${{ matrix.HOST_CONFIG }} | |
| ENABLE_HYPRE: ${{ matrix.ENABLE_HYPRE }} | |
| ENABLE_TRILINOS: ${{ matrix.ENABLE_TRILINOS }} | |
| GCP_BUCKET: ${{ matrix.GCP_BUCKET }} | |
| run: | | |
| source ./scripts/ci_build_and_test.sh | |
| TMP_DIR=/tmp | |
| GEOSX_EXPORT_DIR=GEOSX-and-TPL-${GITHUB_SHA:0:7} | |
| docker cp -a ${CONTAINER_NAME}:${GEOSX_TPL_DIR}/.. ${TMP_DIR}/${GEOSX_EXPORT_DIR} | |
| GEOSX_BUNDLE=${TMP_DIR}/${GEOSX_EXPORT_DIR}.tar.gz | |
| tar czf ${GEOSX_BUNDLE} --directory=${TMP_DIR} ${GEOSX_EXPORT_DIR} | |
| CLOUDSDK_PYTHON=python3 gsutil cp -a public-read ${GEOSX_BUNDLE} gs://${GCP_BUCKET}/ | |
| # Convenience job - passes when all other jobs have passed. | |
| check_that_all_jobs_succeeded: | |
| runs-on: ubuntu-22.04 | |
| needs: [check_pull_request_is_not_a_draft, check_pull_request_is_assigned, check_submodules, code_style, documentation, linux_builds] | |
| steps: | |
| - name: Success | |
| run: "true" |