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please do not emit channels with ch_ prefix - bam_rseqc subworkflows …

please do not emit channels with ch_ prefix - bam_rseqc subworkflows … #7

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Job Run time
editorconfig
9s
pre-commit
48s
nf-test-changes
5s
prettier
44s
pytest-changes
9s
pytest (affy/justrma, conda)
4m 1s
pytest (affy/justrma, docker)
3m 29s
pytest (affy/justrma, singularity)
4m 51s
pytest (amps, conda)
4m 12s
pytest (amps, docker)
3m 38s
pytest (amps, singularity)
4m 20s
pytest (angsd/contamination, conda)
2m 54s
pytest (angsd/contamination, docker)
2m 15s
pytest (angsd/contamination, singularity)
2m 10s
pytest (bases2fastq, docker)
2m 19s
pytest (bbmap/pileup, conda)
2m 17s
pytest (bbmap/pileup, docker)
2m 44s
pytest (bbmap/pileup, singularity)
2m 31s
pytest (bedtools/intersect, conda)
2m 20s
pytest (bedtools/intersect, docker)
2m 17s
pytest (bedtools/intersect, singularity)
2m 8s
pytest (bedtools/merge, conda)
2m 2s
pytest (bedtools/merge, docker)
1m 54s
pytest (bedtools/merge, singularity)
2m 4s
pytest (bedtools/slop, conda)
2m 6s
pytest (bedtools/slop, docker)
2m 8s
pytest (bedtools/slop, singularity)
2m 16s
pytest (bedtools/sort, conda)
2m 25s
pytest (bedtools/sort, docker)
2m 2s
pytest (bedtools/sort, singularity)
2m 8s
pytest (bowtie/align, conda)
3m 26s
pytest (bowtie/align, docker)
2m 17s
pytest (bowtie/align, singularity)
2m 7s
pytest (cellranger/count, docker)
4m 55s
pytest (cellranger/count, singularity)
7m 10s
pytest (cellranger/mkfastq, docker)
2m 58s
pytest (cellranger/mkfastq, singularity)
4m 30s
pytest (cellranger/mkgtf, docker)
2m 48s
pytest (cellranger/mkgtf, singularity)
4m 38s
pytest (cellranger/mkref, docker)
2m 32s
pytest (cellranger/mkref, singularity)
4m 18s
pytest (cellranger/mkvdjref, docker)
2m 48s
pytest (cellranger/mkvdjref, singularity)
4m 24s
pytest (cellranger/multi, docker)
7m 10s
pytest (cellranger/multi, singularity)
13m 40s
pytest (cellranger/vdj, docker)
3m 3s
pytest (cellranger/vdj, singularity)
5m 0s
pytest (cellrangerarc/count, docker)
13m 9s
pytest (cellrangerarc/count, singularity)
20m 30s
pytest (cellrangerarc/mkfastq, docker)
3m 5s
pytest (cellrangerarc/mkfastq, singularity)
7m 14s
pytest (cellrangerarc/mkgtf, docker)
2m 32s
pytest (cellrangerarc/mkgtf, singularity)
4m 45s
pytest (cellrangerarc/mkref, docker)
4m 13s
pytest (cellrangerarc/mkref, singularity)
6m 1s
pytest (cellrangeratac/count, docker)
10m 36s
pytest (cellrangeratac/count, singularity)
20m 51s
pytest (cellrangeratac/mkfastq, docker)
3m 47s
pytest (cellrangeratac/mkfastq, singularity)
3m 57s
pytest (cnvkit/access, conda)
4m 35s
pytest (cnvkit/access, docker)
2m 40s
pytest (cnvkit/access, singularity)
3m 18s
pytest (cnvkit/antitarget, conda)
3m 8s
pytest (cnvkit/antitarget, docker)
2m 22s
pytest (cnvkit/antitarget, singularity)
2m 32s
pytest (cnvkit/batch, conda)
9m 20s
pytest (cnvkit/batch, docker)
5m 5s
pytest (cnvkit/batch, singularity)
5m 52s
pytest (cnvkit/call, conda)
3m 32s
pytest (cnvkit/call, docker)
2m 52s
pytest (cnvkit/call, singularity)
2m 11s
pytest (cnvkit/export, conda)
6m 33s
pytest (cnvkit/export, docker)
3m 17s
pytest (cnvkit/export, singularity)
3m 29s
pytest (cnvkit/genemetrics, conda)
3m 48s
pytest (cnvkit/genemetrics, docker)
2m 25s
pytest (cnvkit/genemetrics, singularity)
2m 44s
pytest (cnvkit/reference, conda)
2m 52s
pytest (cnvkit/reference, docker)
2m 22s
pytest (cnvkit/reference, singularity)
3m 9s
pytest (cnvkit/target, conda)
3m 39s
pytest (cnvkit/target, docker)
2m 46s
pytest (cnvkit/target, singularity)
2m 35s
pytest (custom/tabulartogseacls, conda)
2m 36s
pytest (custom/tabulartogseacls, docker)
2m 6s
pytest (custom/tabulartogseacls, singularity)
2m 15s
pytest (deeparg/downloaddata, conda)
5m 4s
pytest (deeparg/downloaddata, docker)
4m 0s
pytest (deeparg/downloaddata, singularity)
3m 53s
pytest (deeparg/predict, conda)
7m 29s
pytest (deeparg/predict, docker)
7m 30s
pytest (deeparg/predict, singularity)
7m 9s
pytest (deeptools/computematrix, conda)
2m 24s
pytest (deeptools/computematrix, docker)
2m 18s
pytest (deeptools/computematrix, singularity)
3m 33s
pytest (deeptools/plotfingerprint, conda)
2m 48s
pytest (deeptools/plotfingerprint, docker)
2m 18s
pytest (deeptools/plotfingerprint, singularity)
3m 29s
pytest (deeptools/plotheatmap, conda)
3m 20s
pytest (deeptools/plotheatmap, docker)
2m 27s
pytest (deeptools/plotheatmap, singularity)
2m 39s
pytest (deeptools/plotprofile, conda)
2m 35s
pytest (deeptools/plotprofile, docker)
2m 23s
pytest (deeptools/plotprofile, singularity)
1m 58s
pytest (faqcs, conda)
2m 42s
pytest (faqcs, docker)
2m 31s
pytest (faqcs, singularity)
2m 4s
pytest (fqtk, conda)
2m 13s
pytest (fqtk, docker)
2m 11s
pytest (fqtk, singularity)
2m 24s
pytest (gprofiler2/gost, conda)
3m 29s
pytest (gprofiler2/gost, docker)
2m 59s
pytest (gprofiler2/gost, singularity)
3m 13s
pytest (gtdbtk/classifywf, conda)
2m 27s
pytest (gtdbtk/classifywf, docker)
2m 1s
pytest (gtdbtk/classifywf, singularity)
2m 15s
pytest (hifiasm, conda)
2m 50s
pytest (hifiasm, docker)
2m 23s
pytest (hifiasm, singularity)
2m 29s
pytest (homer/findpeaks, conda)
5m 23s
pytest (homer/findpeaks, docker)
6m 11s
pytest (homer/findpeaks, singularity)
4m 20s
pytest (homer/maketagdirectory, conda)
7m 1s
pytest (homer/maketagdirectory, docker)
4m 46s
pytest (homer/maketagdirectory, singularity)
3m 14s
pytest (homer/makeucscfile, conda)
5m 32s
pytest (homer/makeucscfile, docker)
3m 51s
pytest (homer/makeucscfile, singularity)
2m 59s
pytest (homer/pos2bed, conda)
5m 52s
pytest (homer/pos2bed, docker)
3m 1s
pytest (homer/pos2bed, singularity)
2m 38s
pytest (maltextract, conda)
4m 12s
pytest (maltextract, docker)
3m 38s
pytest (maltextract, singularity)
3m 41s
pytest (manta/convertinversion, docker)
2m 44s
pytest (manta/convertinversion, singularity)
3m 18s
pytest (motus/profile, conda)
35m 7s
pytest (motus/profile, docker)
5m 26s
pytest (motus/profile, singularity)
36m 0s
pytest (ncbigenomedownload, conda)
2m 14s
pytest (ncbigenomedownload, docker)
2m 17s
pytest (ncbigenomedownload, singularity)
2m 6s
pytest (parabricks/dbsnp, docker)
2m 35s
pytest (parabricks/dbsnp, singularity)
4m 24s
pytest (parabricks/deepvariant, docker)
2m 57s
pytest (parabricks/deepvariant, singularity)
4m 31s
pytest (parabricks/fq2bam, docker)
3m 48s
pytest (parabricks/fq2bam, singularity)
5m 28s
pytest (parabricks/genotypegvcf, docker)
3m 4s
pytest (parabricks/genotypegvcf, singularity)
4m 6s
pytest (parabricks/haplotypecaller, docker)
2m 55s
pytest (parabricks/haplotypecaller, singularity)
4m 31s
pytest (parabricks/indexgvcf, docker)
2m 46s
pytest (parabricks/indexgvcf, singularity)
4m 27s
pytest (parabricks/mutectcaller, docker)
3m 16s
pytest (parabricks/mutectcaller, singularity)
4m 59s
pytest (phantompeakqualtools, conda)
3m 37s
pytest (phantompeakqualtools, docker)
2m 49s
pytest (phantompeakqualtools, singularity)
2m 5s
pytest (pints/caller, conda)
10m 47s
pytest (pints/caller, docker)
11m 3s
pytest (pints/caller, singularity)
11m 19s
pytest (preseq/ccurve, conda)
2m 18s
pytest (preseq/ccurve, docker)
1m 57s
pytest (preseq/ccurve, singularity)
2m 13s
pytest (pretextsnapshot, conda)
4m 0s
pytest (pretextsnapshot, docker)
3m 41s
pytest (pretextsnapshot, singularity)
3m 23s
pytest (purgedups/calcuts, conda)
3m 45s
pytest (purgedups/calcuts, docker)
2m 10s
pytest (purgedups/calcuts, singularity)
2m 0s
pytest (purgedups/purgedups, conda)
4m 21s
pytest (purgedups/purgedups, docker)
2m 6s
pytest (purgedups/purgedups, singularity)
2m 5s
pytest (samtools/collatefastq, conda)
3m 12s
pytest (samtools/collatefastq, docker)
2m 19s
pytest (samtools/collatefastq, singularity)
2m 21s
pytest (samtools/coverage, conda)
2m 11s
pytest (samtools/coverage, docker)
1m 53s
pytest (samtools/coverage, singularity)
2m 21s
pytest (samtools/depth, conda)
2m 48s
pytest (samtools/depth, docker)
2m 9s
pytest (samtools/depth, singularity)
2m 35s
pytest (samtools/dict, conda)
2m 8s
pytest (samtools/dict, docker)
2m 22s
pytest (samtools/dict, singularity)
2m 3s
pytest (samtools/faidx, conda)
3m 19s
pytest (samtools/faidx, docker)
2m 24s
pytest (samtools/faidx, singularity)
2m 24s
pytest (samtools/fasta, conda)
2m 17s
pytest (samtools/fasta, docker)
1m 58s
pytest (samtools/fasta, singularity)
2m 10s
pytest (samtools/getrg, conda)
2m 9s
pytest (samtools/getrg, docker)
1m 52s
pytest (samtools/getrg, singularity)
2m 5s
pytest (samtools/import, conda)
2m 46s
pytest (samtools/import, docker)
2m 15s
pytest (samtools/import, singularity)
2m 17s
pytest (samtools/markdup, conda)
4m 0s
pytest (samtools/markdup, docker)
2m 9s
pytest (samtools/markdup, singularity)
2m 34s
pytest (samtools/reheader, conda)
2m 17s
pytest (samtools/reheader, docker)
2m 15s
pytest (samtools/reheader, singularity)
2m 34s
pytest (sentieon/dedup, docker)
2m 24s
pytest (sentieon/dedup, singularity)
2m 10s
pytest (sgdemux, conda)
2m 9s
pytest (sgdemux, docker)
2m 6s
pytest (sgdemux, singularity)
2m 15s
pytest (shinyngs/app, conda)
3m 53s
pytest (shinyngs/app, docker)
3m 14s
pytest (shinyngs/app, singularity)
6m 8s
pytest (shinyngs/staticdifferential, conda)
3m 34s
pytest (shinyngs/staticdifferential, docker)
2m 43s
pytest (shinyngs/staticdifferential, singularity)
6m 13s
pytest (shinyngs/staticexploratory, conda)
4m 30s
pytest (shinyngs/staticexploratory, docker)
3m 22s
pytest (shinyngs/staticexploratory, singularity)
2m 55s
pytest (shinyngs/validatefomcomponents, conda)
3m 31s
pytest (shinyngs/validatefomcomponents, docker)
2m 46s
pytest (shinyngs/validatefomcomponents, singularity)
2m 48s
pytest (subworkflows/bam_markduplicates_samtools, conda)
2m 41s
pytest (subworkflows/bam_markduplicates_samtools, docker)
2m 17s
pytest (subworkflows/bam_markduplicates_samtools, singularity)
2m 22s
pytest (subworkflows/homer/groseq, conda)
1m 39s
pytest (subworkflows/homer/groseq, docker)
1m 44s
pytest (subworkflows/homer/groseq, singularity)
1m 52s
pytest (subworkflows/initialise, conda)
2m 3s
pytest (subworkflows/initialise, docker)
2m 17s
pytest (subworkflows/initialise, singularity)
2m 55s
pytest (subworkflows/utils_nextflow_pipeline, conda)
1m 49s
pytest (subworkflows/utils_nextflow_pipeline, docker)
2m 0s
pytest (subworkflows/utils_nextflow_pipeline, singularity)
1m 50s
pytest (subworkflows/utils_nfcore_pipeline, conda)
1m 50s
pytest (subworkflows/utils_nfcore_pipeline, docker)
1m 59s
pytest (subworkflows/utils_nfcore_pipeline, singularity)
2m 9s
pytest (umitools/dedup, conda)
8m 42s
pytest (umitools/dedup, docker)
3m 10s
pytest (umitools/dedup, singularity)
3m 31s
pytest (umitools/group, conda)
6m 34s
pytest (umitools/group, docker)
2m 57s
pytest (umitools/group, singularity)
3m 20s
confirm-pass
1s
15h 20m 48s