removed test cases of experimental functionality

FRED-2 · Nov 23, 2015 · 307af54 · 307af54
1 parent b75066b
commit 307af54
Showing 1 changed file with 1 addition and 9 deletions.
diff --git a/Fred2/test/TestProtein.py b/Fred2/test/TestProtein.py
@@ -9,7 +9,7 @@
 from Fred2.test.VariantsForTesting import *
 
 from Fred2.Core.Protein import Protein
-from Fred2.Core.Generator import generate_peptides_from_proteins, generate_transcripts_from_tumor_variants
+from Fred2.Core.Generator import generate_peptides_from_proteins
 from Fred2.Core.Generator import generate_proteins_from_transcripts
 from Fred2.IO.ADBAdapter import EIdentifierTypes
 
@@ -127,14 +127,6 @@ def test3_protein_from_variants(self):
         ## GENERATE Peptides:
         peptides = generate_peptides_from_proteins(proteins,2)
 
-    def test1_protein_from_tumor_variants(self):
-        dummy_db = DummyAdapter()
-        normal_vars = [var_n2]
-        tumor_vars = [var_t1]
-        t = list(generate_transcripts_from_tumor_variants(normal_vars, tumor_vars, dummy_db, EIdentifierTypes.REFSEQ))
-        for trans in generate_transcripts_from_tumor_variants(normal_vars, tumor_vars, dummy_db,
-                                                              EIdentifierTypes.REFSEQ):
-            print "Tumor trans", repr(trans)
 
     def test4_peptides_from_variants(self):
         """