EVA-3221 - Provide the expected parameter to the brokering prep #161
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eva_submission/eload_brokering.py
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| @@ -144,10 +145,26 @@ def _get_valid_vcf_files(self): | |||
| valid_vcf_files.extend(files) if files else None | |||
| return valid_vcf_files | |||
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| def _generate_csv_mappings(self): | |||
| vcf_files_mapping_csv = os.path.join(self.eload_dir, 'vcf_files_mapping.csv') | |||
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Can we re-use the same csv file created in the validation for this? If not, we should perhaps name the file vcf_files_to_broker.csv so we don't overwrite the other one.
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They are different so I change the names.
nitin-ebi
approved these changes
Jun 30, 2023
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