EVA-3316 - Detect ELOAD status

bin/retrieve_archives_from_lts.py

@@ -56,11 +56,11 @@ def main():
     # Load the config_file from default location
     load_config()
 
-    with ELOADRetrieval() as eload_retrieval:
-        eload_retrieval.retrieve_eloads_and_projects(args.eload, args.retrieve_associated_project, args.update_path,
-                                                     args.eload_dirs_files, args.project, args.project_dirs_files,
-                                                     args.eload_lts_dir, args.project_lts_dir, args.eload_retrieval_dir,
-                                                     args.project_retrieval_dir)
+    eload_retrieval = ELOADRetrieval()
+    eload_retrieval.retrieve_eloads_and_projects(args.eload, args.retrieve_associated_project, args.update_path,
+                                                 args.eload_dirs_files, args.project, args.project_dirs_files,
+                                                 args.eload_lts_dir, args.project_lts_dir, args.eload_retrieval_dir,
+                                                 args.project_retrieval_dir)
 
 
 if __name__ == "__main__":

bin/submission_status.py

@@ -0,0 +1,49 @@
+#!/usr/bin/env python
+
+# Copyright 2020 EMBL - European Bioinformatics Institute
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import logging
+from argparse import ArgumentParser
+
+from ebi_eva_common_pyutils.logger import logging_config as log_cfg
+
+from eva_submission.eload_status import EloadStatus
+from eva_submission.eload_validation import EloadValidation
+from eva_submission.submission_config import load_config
+
+logger = log_cfg.get_logger(__name__)
+
+
+def main():
+    argparse = ArgumentParser(description='Provide a submission status for any ELOAD based on what has been accessioned and loaded.')
+    argparse.add_argument('--eload', required=True, type=int, help='The ELOAD number for this submission')
+    argparse.add_argument('--debug', action='store_true', default=False,
+                          help='Set the script to output logging information at debug level')
+
+    args = argparse.parse_args()
+
+    log_cfg.add_stdout_handler()
+    if args.debug:
+        log_cfg.set_log_level(logging.DEBUG)
+
+    # Load the config_file from default location
+    load_config()
+
+    with EloadStatus(args.eload) as eload:
+        eload.status()
+
+
+if __name__ == "__main__":
+    main()