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V2 api numeric inconsistencies #716

Merged
merged 26 commits into from
Aug 13, 2024
Merged

V2 api numeric inconsistencies #716

merged 26 commits into from
Aug 13, 2024

Commits on Aug 5, 2024

  1. Added fields HAS_DIRECT_PARENTS, HAS_DIRECT_CHILDREN, HAS_HIERARCHICA… 

    …L_PARENTS, HAS_HIERARCHICAL_CHILDREN, IMPORTED, IS_DEFNING_ONTOLOGY.
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    henrietteharmse committed Aug 5, 2024
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  2. Imported field is now boolean and uses defined fields.

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  3. isDefiningOntology uses defined fields.

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  4. Fixed spelling of IS_DEFINING_ONTOLOGY and used it in LinkerPass2.

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  5. hasDirectChildren field is now boolean and uses defined fields.

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  6. Merge remote-tracking branch 'origin/dev' into v2-api-inconsistencies 

    # Conflicts:
#	ols-shared/src/main/java/uk/ac/ebi/ols/shared/DefinedFields.java
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Commits on Aug 6, 2024

  1. Changed hasDirectParent to hasDirectParents to match with hasDirectCh… 

    …ildren naming convention. hasDirectParents is now boolean and uses DefinedFields.
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  2. Missed HierarchyFlagsAnnotator in previous commit.

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    henrietteharmse committed Aug 6, 2024
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  3. Changed hasHierarchicalParent to hasHierarchicalParents. hasHierarchi… 

    …calParents is now boolean and uses DefinedFields.
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  4. Renamed enpoint /ontologies/{onto}/classes/{class}/instances to /onto… 

    …logies/{onto}/classes/{class}/individuals.
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  5. Ordered DefinedFields and made isPreferredRoots boolean.

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  6. HAS_LOCAL_DEFINITION uses DefinedFields

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  7. HAS_INDIVIDUAL is now boolean and uses DefinedFields

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    henrietteharmse committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. Unit test output updated

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    henrietteharmse committed Aug 7, 2024
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  2. API test output updated and API testing documentation error corrected.

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    henrietteharmse committed Aug 7, 2024
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  3. hasHierarchicalChildren needs to test against boolean on frontend.

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    henrietteharmse committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. Fixed hasDirectParent issue.

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  2. Merge v2-api-inconsistencies

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    henrietteharmse committed Aug 8, 2024
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  3. Changed numDirectDescendants to numDescendants. NumDescendants and Nu… 

    …mHierarchicalDescendants are now integer instead of string and uses DefinedFields.
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  4. numAppearsIn is now integer instead of string.

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  5. Missed hasHierarchicalParents.

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    henrietteharmse committed Aug 8, 2024
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Commits on Aug 9, 2024

  1. Improved logging of JSON2RDF to printout ontologyId when writing of o… 

    …ntology fails. Used slf4j instead of System.out.
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    henrietteharmse committed Aug 9, 2024
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  2. Missed SynonymAnnotator in prev commit.

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    henrietteharmse committed Aug 9, 2024
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  3. Catch all exceptions, not only IOExceptions.

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    henrietteharmse committed Aug 9, 2024
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  4. More error handling workaround for gsso failing.

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    henrietteharmse committed Aug 9, 2024
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Commits on Aug 13, 2024

  1. hasChildren value is determined based on children, not parents!

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    henrietteharmse committed Aug 13, 2024
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