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edit fitting code
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Denis-Titov committed Feb 23, 2024
1 parent e4c2c3a commit a17e346
Showing 1 changed file with 6 additions and 7 deletions.
13 changes: 6 additions & 7 deletions src/rate_equation_fitting.jl
Original file line number Diff line number Diff line change
Expand Up @@ -12,22 +12,21 @@ function fit_rate_equation(
data::DataFrame,
metab_names::Tuple,
param_names::Tuple;
n_iter = 20
# optimization_kwargs = optimization_kwargs
n_iter = 20 # optimization_kwargs = optimization_kwargs
)
train_res = train_rate_equation(
train_results = train_rate_equation(
rate_equation::Function,
data::DataFrame,
metab_names::Tuple,
param_names::Tuple;
n_iter = n_iter,
nt_param_choice = nothing
# optimization_kwargs = optimization_kwargs
nt_param_choice = nothing # optimization_kwargs = optimization_kwargs
)
rescaled_params = param_rescaling(train_res[2], param_names)
return (loss=train_res[1], params = NamedTuple{param_names}(rescaled_params))
rescaled_params = param_rescaling(train_results[2], param_names)
return (loss = train_results[1], params = NamedTuple{param_names}(rescaled_params))
end


function train_rate_equation(
rate_equation::Function,
data::DataFrame,
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