Solve deprecationwarnings from testbank

[veenstrajelmer]

Version checks

• I have checked that this issue has not already been reported.
• I have checked that this bug exists on the latest version.

Reproducible Example

Running pytest

Current behaviour

The following warnings are printed (status on 18-10-2024):

2024-10-18T10:59:55.3971023Z ============================= test session starts =============================
2024-10-18T10:59:55.3972357Z platform win32 -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
2024-10-18T10:59:55.3972994Z rootdir: D:\a\hydromt_delft3dfm\hydromt_delft3dfm
2024-10-18T10:59:55.3973479Z configfile: pyproject.toml
2024-10-18T10:59:55.3973880Z plugins: cov-5.0.0
2024-10-18T10:59:55.3974161Z collected 13 items
2024-10-18T10:59:55.3974349Z 
2024-10-18T11:00:21.7784775Z tests\test_dflowfm.py ....                                               [ 30%]
2024-10-18T11:02:21.1656440Z tests\test_hydromt.py ......                                             [ 76%]
2024-10-18T11:02:21.3700343Z tests\test_workflows_crosssections.py .                                  [ 84%]
2024-10-18T11:02:36.2465541Z tests\test_workflows_mesh.py ..                                          [100%]
2024-10-18T11:02:36.2466209Z 
2024-10-18T11:02:36.2466416Z ============================== warnings summary ===============================
2024-10-18T11:02:36.2467059Z tests/test_dflowfm.py: 7 warnings
2024-10-18T11:02:36.2467818Z tests/test_hydromt.py: 8 warnings
2024-10-18T11:02:36.2468237Z tests/test_workflows_mesh.py: 4 warnings
2024-10-18T11:02:36.2469154Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\utils.py:198: FutureWarning: DataFrame.applymap has been deprecated. Use DataFrame.map instead.
2024-10-18T11:02:36.2470157Z     df_crsdef = df_crsdef.applymap(lambda x: _list2Str(x))
2024-10-18T11:02:36.2470476Z 
2024-10-18T11:02:36.2470630Z tests/test_dflowfm.py: 7 warnings
2024-10-18T11:02:36.2470970Z tests/test_hydromt.py: 8 warnings
2024-10-18T11:02:36.2471337Z tests/test_workflows_mesh.py: 4 warnings
2024-10-18T11:02:36.2473967Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\utils.py:362: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
2024-10-18T11:02:36.2475988Z     gdf_out["frictionvalue"] = gdf_out["frictionvalue"].replace(fricval)
2024-10-18T11:02:36.2476355Z 
2024-10-18T11:02:36.2476504Z tests/test_dflowfm.py: 4 warnings
2024-10-18T11:02:36.2476850Z tests/test_hydromt.py: 32 warnings
2024-10-18T11:02:36.2477839Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\pyogrio\raw.py:198: RuntimeWarning: driver GeoJSON does not support open option MODE
2024-10-18T11:02:36.2478691Z     return ogr_read(
2024-10-18T11:02:36.2478866Z 
2024-10-18T11:02:36.2479013Z tests/test_dflowfm.py: 6 warnings
2024-10-18T11:02:36.2479352Z tests/test_hydromt.py: 46 warnings
2024-10-18T11:02:36.2480482Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\hydromt\gis_utils.py:207: DeprecationWarning: The 'unary_union' attribute is deprecated, use the 'union_all()' method instead.
2024-10-18T11:02:36.2481503Z     geom = geom.unary_union
2024-10-18T11:02:36.2481701Z 
2024-10-18T11:02:36.2481847Z tests/test_dflowfm.py: 4 warnings
2024-10-18T11:02:36.2484069Z tests/test_hydromt.py: 6 warnings
2024-10-18T11:02:36.2484663Z tests/test_workflows_mesh.py: 2 warnings
2024-10-18T11:02:36.2485479Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\utils.py:870: SettingWithCopyWarning: 
2024-10-18T11:02:36.2486271Z   A value is trying to be set on a copy of a slice from a DataFrame.
2024-10-18T11:02:36.2486865Z   Try using .loc[row_indexer,col_indexer] = value instead
2024-10-18T11:02:36.2487264Z   
2024-10-18T11:02:36.2488135Z   See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
2024-10-18T11:02:36.2488989Z     _df["geometry"] = _df.apply(
2024-10-18T11:02:36.2489344Z 
2024-10-18T11:02:36.2489565Z tests/test_dflowfm.py::test_setup_channels
2024-10-18T11:02:36.2491067Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\pooch\processors.py:262: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
2024-10-18T11:02:36.2492656Z     tar_file.extractall(path=extract_dir)
2024-10-18T11:02:36.2493124Z 
2024-10-18T11:02:36.2493259Z tests/test_dflowfm.py: 3 warnings
2024-10-18T11:02:36.2493634Z tests/test_hydromt.py: 18 warnings
2024-10-18T11:02:36.2495387Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\geopandas\geoseries.py:720: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]`
2024-10-18T11:02:36.2497795Z     val = getattr(super(), mtd)(*args, **kwargs)
2024-10-18T11:02:36.2498372Z 
2024-10-18T11:02:36.2498598Z tests/test_dflowfm.py: 1 warning
2024-10-18T11:02:36.2499274Z tests/test_hydromt.py: 16 warnings
2024-10-18T11:02:36.2500769Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\geopandas\geodataframe.py:1819: SettingWithCopyWarning: 
2024-10-18T11:02:36.2502274Z   A value is trying to be set on a copy of a slice from a DataFrame.
2024-10-18T11:02:36.2503236Z   Try using .loc[row_indexer,col_indexer] = value instead
2024-10-18T11:02:36.2503999Z   
2024-10-18T11:02:36.2506231Z   See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
2024-10-18T11:02:36.2507652Z     super().__setitem__(key, value)
2024-10-18T11:02:36.2508051Z 
2024-10-18T11:02:36.2508292Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2508956Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2509840Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2510499Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2511160Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2511851Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2512546Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2513222Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2515054Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\crosssections.py:381: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
2024-10-18T11:02:36.2517820Z   The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
2024-10-18T11:02:36.2519181Z   
2024-10-18T11:02:36.2520889Z   For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
2024-10-18T11:02:36.2522871Z   
2024-10-18T11:02:36.2523440Z   
2024-10-18T11:02:36.2524525Z     crosssections_["crsdef_closed"].replace({"yes": 1, "no": 0}, inplace=True)
2024-10-18T11:02:36.2526068Z 
2024-10-18T11:02:36.2526366Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2527076Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2527765Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2528466Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2529155Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2529861Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2530580Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2531309Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2534561Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\crosssections.py:381: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
2024-10-18T11:02:36.2537599Z     crosssections_["crsdef_closed"].replace({"yes": 1, "no": 0}, inplace=True)
2024-10-18T11:02:36.2538265Z 
2024-10-18T11:02:36.2538513Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2539230Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2542087Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\hydromt\gis_utils.py:120: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '[]' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.
2024-10-18T11:02:36.2544686Z     gdf1.loc[valid, "index_right"] = idx_nn[valid]
2024-10-18T11:02:36.2545133Z 
2024-10-18T11:02:36.2545382Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2546125Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2546997Z tests/test_workflows_crosssections.py::test_set_xyz_crosssections
2024-10-18T11:02:36.2550563Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\crosssections.py:436: DeprecationWarning: DataFrameGroupBy.apply operated on the grouping columns. This behavior is deprecated, and in a future version of pandas the grouping columns will be excluded from the operation. Either pass `include_groups=False` to exclude the groupings or explicitly select the grouping columns after groupby to silence this warning.
2024-10-18T11:02:36.2554156Z     crosssections = crosssections.groupby("crsid").apply(xyzp2xyzl, (["order"]))
2024-10-18T11:02:36.2554834Z 
2024-10-18T11:02:36.2555076Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2555957Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2558896Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\hydromt\gis_utils.py:120: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['river_1']' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.
2024-10-18T11:02:36.2561917Z     gdf1.loc[valid, "index_right"] = idx_nn[valid]
2024-10-18T11:02:36.2562375Z 
2024-10-18T11:02:36.2562599Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2563021Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2563458Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2563906Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2564381Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2564835Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2565312Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2565768Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2566218Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2567368Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\shapely\linear.py:88: RuntimeWarning: invalid value encountered in line_locate_point
2024-10-18T11:02:36.2568282Z     return lib.line_locate_point(line, other)
2024-10-18T11:02:36.2568575Z 
2024-10-18T11:02:36.2568729Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2569179Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2569611Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2570719Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\dflowfm.py:1460: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
2024-10-18T11:02:36.2572293Z   The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
2024-10-18T11:02:36.2573151Z   
2024-10-18T11:02:36.2574195Z   For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
2024-10-18T11:02:36.2575165Z   
2024-10-18T11:02:36.2575391Z   
2024-10-18T11:02:36.2575790Z     manholes["_streetlevel_dem"].fillna(manholes["streetlevel"], inplace=True)
2024-10-18T11:02:36.2576180Z 
2024-10-18T11:02:36.2576361Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2576774Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2577221Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2577681Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2579497Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\hydromt\gis_utils.py:120: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['branch_12' 'branch_3']' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.
2024-10-18T11:02:36.2581111Z     gdf1.loc[valid, "index_right"] = idx_nn[valid]
2024-10-18T11:02:36.2581382Z 
2024-10-18T11:02:36.2581530Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2581966Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2582409Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2582864Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2584013Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\crosssections.py:615: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
2024-10-18T11:02:36.2585737Z   The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
2024-10-18T11:02:36.2586595Z   
2024-10-18T11:02:36.2587631Z   For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
2024-10-18T11:02:36.2588623Z   
2024-10-18T11:02:36.2588821Z   
2024-10-18T11:02:36.2589194Z     crosssections["closed"].replace({1: "yes", 0: "no"}, inplace=True)
2024-10-18T11:02:36.2589574Z 
2024-10-18T11:02:36.2589727Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2590154Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2590571Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2591034Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2592197Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\crosssections.py:759: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
2024-10-18T11:02:36.2593902Z   The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
2024-10-18T11:02:36.2594751Z   
2024-10-18T11:02:36.2595750Z   For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
2024-10-18T11:02:36.2596747Z   
2024-10-18T11:02:36.2596993Z   
2024-10-18T11:02:36.2597387Z     crosssections_["crsdef_closed"].replace({"yes": 1, "no": 0}, inplace=True)
2024-10-18T11:02:36.2597793Z 
2024-10-18T11:02:36.2597948Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2598379Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2598791Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2599244Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2601162Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\crosssections.py:759: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
2024-10-18T11:02:36.2602977Z     crosssections_["crsdef_closed"].replace({"yes": 1, "no": 0}, inplace=True)
2024-10-18T11:02:36.2603355Z 
2024-10-18T11:02:36.2603554Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2603960Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2604491Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2604960Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2606718Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\hydromt\gis_utils.py:120: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['branch_13']' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.
2024-10-18T11:02:36.2608277Z     gdf1.loc[valid, "index_right"] = idx_nn[valid]
2024-10-18T11:02:36.2608581Z 
2024-10-18T11:02:36.2608732Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2609191Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2609624Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2610036Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2610505Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2610961Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2612074Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\dflowfm.py:1619: DeprecationWarning: Using iterating over the DataCatalog directly is deprecated."            " Please use cat.get_source("name")
2024-10-18T11:02:36.2614062Z     and self.data_catalog[forcing_geodataset_fn].data_type == "GeoDataset"
2024-10-18T11:02:36.2614450Z 
2024-10-18T11:02:36.2614615Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2615072Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2616680Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\pandas\core\generic.py:6313: DeprecationWarning: Overriding the CRS of a GeoDataFrame that already has CRS. This unsafe behavior will be deprecated in future versions. Use GeoDataFrame.set_crs method instead
2024-10-18T11:02:36.2618078Z     return object.__setattr__(self, name, value)
2024-10-18T11:02:36.2618355Z 
2024-10-18T11:02:36.2618535Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2618973Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2619990Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\dflowfm.py:1709: DeprecationWarning: The staticgeoms method will be deprecated in future versions, use geoms instead.
2024-10-18T11:02:36.2621043Z     network_by_branchtype = self.staticgeoms[f"{branch_type}s"]
2024-10-18T11:02:36.2621386Z 
2024-10-18T11:02:36.2622010Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2622545Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2624326Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\hydromt\gis_utils.py:120: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['branch_7']' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.
2024-10-18T11:02:36.2625886Z     gdf1.loc[valid, "index_right"] = idx_nn[valid]
2024-10-18T11:02:36.2626189Z 
2024-10-18T11:02:36.2626342Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2626807Z tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2627888Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\dflowfm.py:2653: DeprecationWarning: The 'unary_union' attribute is deprecated, use the 'union_all()' method instead.
2024-10-18T11:02:36.2663318Z     ).unary_union
2024-10-18T11:02:36.2663569Z 
2024-10-18T11:02:36.2663840Z tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2664563Z tests/test_workflows_mesh.py::test_hydrolib_network_from_mesh
2024-10-18T11:02:36.2665367Z tests/test_workflows_mesh.py::test_setup_links1d2d_add_links
2024-10-18T11:02:36.2668378Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\utils.py:148: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
2024-10-18T11:02:36.2670250Z     branches["branchtype"] = branches["branchtype"].replace(
2024-10-18T11:02:36.2670594Z 
2024-10-18T11:02:36.2670735Z tests/test_hydromt.py: 25 warnings
2024-10-18T11:02:36.2672472Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\pydantic\v1\validators.py:157: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
2024-10-18T11:02:36.2674006Z     return float(v)
2024-10-18T11:02:36.2674200Z 
2024-10-18T11:02:36.2674372Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2674818Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2675801Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\pyogrio\raw.py:198: RuntimeWarning: driver GPKG does not support open option MODE
2024-10-18T11:02:36.2676636Z     return ogr_read(
2024-10-18T11:02:36.2676999Z 
2024-10-18T11:02:36.2677169Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2678743Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\hydromt\gis_utils.py:164: UserWarning: Geometry is in a geographic CRS. Results from 'interpolate' are likely incorrect. Use 'GeoSeries.to_crs()' to re-project geometries to a projected CRS before this operation.
2024-10-18T11:02:36.2680078Z   
2024-10-18T11:02:36.2680447Z     pnts = gdf1.geometry.interpolate(0.5, normalized=True)  # mid point
2024-10-18T11:02:36.2680848Z 
2024-10-18T11:02:36.2681013Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2682494Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\dem.py:113: UserWarning: Geometry is in a geographic CRS. Results from 'length' are likely incorrect. Use 'GeoSeries.to_crs()' to re-project geometries to a projected CRS before this operation.
2024-10-18T11:02:36.2683737Z   
2024-10-18T11:02:36.2684112Z     valid = gdf_riv.length > 0  # drop pits or any zero length segments
2024-10-18T11:02:36.2684477Z 
2024-10-18T11:02:36.2684640Z tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2686964Z   C:\hostedtoolcache\windows\Python\3.12.7\x64\Lib\site-packages\pyflwdir\flwdir.py:434: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int.
2024-10-18T11:02:36.2689061Z     strord=self._check_data(strord, "strord", optional=~restrict_strord),
2024-10-18T11:02:36.2689459Z 
2024-10-18T11:02:36.2689692Z tests/test_workflows_crosssections.py::test_set_xyz_crosssections
2024-10-18T11:02:36.2691458Z   D:\a\hydromt_delft3dfm\hydromt_delft3dfm\hydromt_delft3dfm\workflows\branches.py:1132: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.
2024-10-18T11:02:36.2692927Z     result.loc[~valid_rows, "branch_id"] = ""
2024-10-18T11:02:36.2693187Z 
2024-10-18T11:02:36.2693519Z -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
2024-10-18T11:02:36.2693931Z 
2024-10-18T11:02:36.2694207Z ---------- coverage: platform win32, python 3.12.7-final-0 -----------
2024-10-18T11:02:36.2694740Z Name                                           Stmts   Miss  Cover
2024-10-18T11:02:36.2695274Z ------------------------------------------------------------------
2024-10-18T11:02:36.2695791Z hydromt_delft3dfm\__init__.py                      4      0   100%
2024-10-18T11:02:36.2696338Z hydromt_delft3dfm\dflowfm.py                     922    131    86%
2024-10-18T11:02:36.2696902Z hydromt_delft3dfm\gis_utils.py                    75      4    95%
2024-10-18T11:02:36.2697467Z hydromt_delft3dfm\graph_utils.py                  29      3    90%
2024-10-18T11:02:36.2698024Z hydromt_delft3dfm\mesh_utils.py                  118      3    97%
2024-10-18T11:02:36.2698561Z hydromt_delft3dfm\utils.py                       451     30    93%
2024-10-18T11:02:36.2699113Z hydromt_delft3dfm\workflows\__init__.py            9      0   100%
2024-10-18T11:02:36.2699689Z hydromt_delft3dfm\workflows\boundaries.py        214     76    64%
2024-10-18T11:02:36.2700267Z hydromt_delft3dfm\workflows\branches.py          348     49    86%
2024-10-18T11:02:36.2700822Z hydromt_delft3dfm\workflows\crosssections.py     260     67    74%
2024-10-18T11:02:36.2701390Z hydromt_delft3dfm\workflows\dem.py               129     21    84%
2024-10-18T11:02:36.2701949Z hydromt_delft3dfm\workflows\manholes.py           60      1    98%
2024-10-18T11:02:36.2702508Z hydromt_delft3dfm\workflows\mesh.py              206     52    75%
2024-10-18T11:02:36.2703042Z hydromt_delft3dfm\workflows\region.py             20      2    90%
2024-10-18T11:02:36.2703690Z hydromt_delft3dfm\workflows\roughness.py           8      3    62%
2024-10-18T11:02:36.2704247Z hydromt_delft3dfm\workflows\structures.py         52      9    83%
2024-10-18T11:02:36.2704811Z ------------------------------------------------------------------
2024-10-18T11:02:36.2705247Z TOTAL                                           2905    451    84%
2024-10-18T11:02:36.2705695Z Coverage XML written to file coverage.xml
2024-10-18T11:02:36.2705980Z 
2024-10-18T11:02:36.2706163Z ============================== slowest durations ==============================
2024-10-18T11:02:36.2706703Z 67.61s call     tests/test_hydromt.py::test_model_build[piave]
2024-10-18T11:02:36.2707249Z 21.38s call     tests/test_hydromt.py::test_model_build[local]
2024-10-18T11:02:36.2707785Z 13.04s call     tests/test_hydromt.py::test_model_build_piave_code
2024-10-18T11:02:36.2708387Z 9.97s call     tests/test_dflowfm.py::test_read_write_config_empty_paths
2024-10-18T11:02:36.2709039Z 9.08s call     tests/test_workflows_mesh.py::test_hydrolib_network_from_mesh
2024-10-18T11:02:36.2709630Z 8.81s call     tests/test_dflowfm.py::test_setup_channels
2024-10-18T11:02:36.2710130Z 7.66s call     tests/test_hydromt.py::test_model_class[piave]
2024-10-18T11:02:36.2710757Z 6.34s call     tests/test_hydromt.py::test_model_build_local_code
2024-10-18T11:02:36.2711368Z 4.73s call     tests/test_workflows_mesh.py::test_setup_links1d2d_add_links
2024-10-18T11:02:36.2711964Z 3.98s call     tests/test_dflowfm.py::test_setup_mesh2d_refine
2024-10-18T11:02:36.2712472Z 3.59s call     tests/test_dflowfm.py::test_write_structures
2024-10-18T11:02:36.2713003Z 3.32s call     tests/test_hydromt.py::test_model_class[local]
2024-10-18T11:02:36.2713619Z 0.20s call     tests/test_workflows_crosssections.py::test_set_xyz_crosssections
2024-10-18T11:02:36.2714282Z 0.01s setup    tests/test_dflowfm.py::test_read_write_config_empty_paths
2024-10-18T11:02:36.2714651Z 
2024-10-18T11:02:36.2714941Z (25 durations < 0.005s hidden.  Use -vv to show these durations.)
2024-10-18T11:02:36.2715523Z ================ 13 passed, 280 warnings in 167.95s (0:02:47) =================

Desired behaviour

No warnings

Additional context

No response