DUOS-Release-09-05-2024

What's Changed

• [DCJ-400-maven]: Bump the maven-dependencies group across 1 directory with 5 updates by @dependabot in #2381
• DCJ-620: Add timing to TDR endpoints by @rushtong in #2375
• DCJ-400: Upgrade dropwizard version from 4.0.4 -> 4.0.7 by @rushtong in #2379
• DCJ-626: Code Cleanup by @rushtong in #2382
• DCJ-599: Index datasets sequentially via API by @rushtong in #2383
• DCJ-439: Update test image to postgres 16 by @rushtong in #2373
• DCJ-639: Delete access_rp Table and Refactor Send Reminder Email by @rushtong in #2390
• DCJ-630: Remove deprecated and unused create dataset endpoint by @rushtong in #2385
• [DCJ-400-maven]: Bump the maven-dependencies group with 3 updates by @dependabot in #2392
• DCJ-634: Remove deprecated/unused dataset association endpoints by @rushtong in #2386
• DCJ-631: Remove Unused Dataset Download API by @rushtong in #2391
• DCJ-645: Add Data Submitter to API roles by @rushtong in #2396
• DCJ-644: Minor test refactor to increase stability by @rushtong in #2395
• DCJ-635: Remove Unused Consents APIs and DB Code by @rushtong in #2387
• DCJ-637: Delete /api/dataRequest APIs and associated code by @rushtong in #2388
• DCJ-638: Remove old approved users API by @rushtong in #2389
• DCJ-632: Remove Unused API and Supporting Code by @rushtong in #2393
• DCJ-633: Remove unused dataset search API and supporting code by @rushtong in #2394
• [DCJ-400-maven]: Bump the maven-dependencies group with 8 updates by @dependabot in #2398
• DCJ-570: Add Associated DAA and DAA File info to Get All DACs by @rushtong in #2397

Full Changelog: DUOS-Release-08-20-2024...DUOS-Release-09-05-2024

DUOS-Release-08-20-2024

What's Changed

• [DCJ-469] Delete DAA & DAA-DAC relationships within DAC deletion by @aarohinadkarni in #2359
• [DCJ-400-maven]: Bump the maven-dependencies group with 5 updates by @dependabot in #2372
• DCJ-602: Convert fetch all datasets API to a streamed output by @rushtong in #2371
• [DCJ-607] Add dbGaP PHS ID to ElasticSearch index by @fboulnois in #2374
• DCJ-400: Update logback versions by @rushtong in #2377

Full Changelog: DUOS-Release-08-05-2024...DUOS-Release-08-20-2024

DUOS-Release-08-05-2024

What's Changed

• [DCJ-400-maven]: Bump the maven-dependencies group with 4 updates by @dependabot in #2360
• DCJ-528: Handle potential NPEs better by @rushtong in #2363
• DCJ-532: Allow for study name updates in Study Update API by @rushtong in #2362
• DCJ-516: Use Workload Identity by @rushtong in #2361
• DCJ-483: Add some basic timer metrics for further analysis by @rushtong in #2365
• [DCJ-535] Ensure that admins that are also SOs can bulk add/remove users by @fboulnois in #2364
• [DCJ-389] Add script to create default Broad DAA by @fboulnois in #2366
• DCJ-364: Return all DAAs for a DAR reference id by @rushtong in #2367
• [DCJ-400-maven]: Bump the maven-dependencies group with 3 updates by @dependabot in #2369
• DCJ-539: New API for returning dataset + study summaries by @rushtong in #2368
• [DCJ-400-maven]: Bump the maven-dependencies group with 6 updates by @dependabot in #2370

Full Changelog: DUOS-Release-07-17-2024...DUOS-Release-08-05-2024

DUOS-Release-07-17-2024

What's Changed

• [DCJ-400-maven]: Bump the maven-dependencies group with 5 updates by @dependabot in #2349
• DCJ-242: Standardize user properties columns and DAO calls by @rushtong in #2350
• DCJ-479: Add Coveralls Token Generation Docs by @rushtong in #2353
• [DCJ-400-maven]: Bump the maven-dependencies group with 10 updates by @dependabot in #2354
• [DCJ-481] Add "Broad DAA" flag to appropriate DAA by @aarohinadkarni in #2351
• [DCJ-493] Allow SOs to delete a LC-DAA relationship by @aarohinadkarni in #2355
• DCJ-504 Bug fix for null alias in queries by @rushtong in #2356
• DCJ-485: Handle empty dataset id cases by @rushtong in #2352
• [DCJ-400-maven]: Bump the maven-dependencies group with 3 updates by @dependabot in #2357
• DCJ-515: Fix json parsing for dataset updates by @rushtong in #2358

Full Changelog: DUOS-Release-06-28-2024...DUOS-Release-07-17-2024

DUOS-Release-06-28-2024

What's Changed

• [DCJ-49][DCJ-50][risk=no] New APIs for DAA Enforced DAR Create/Update by @rushtong in #2330
• [DCJ-400] Update ticket number for dependency updates by @fboulnois in #2332
• [DCJ-400-maven]: Bump the maven-dependencies group across 1 directory with 6 updates by @dependabot in #2333
• [DCJ-400-maven]: Bump the maven-dependencies group with 7 updates by @dependabot in #2336
• [DCJ-56] Add DAA delete endpoint by @aarohinadkarni in #2335
• [DCJ-56] Adds endpoint to add a DAC to a DAA by @aarohinadkarni in #2334
• [DCJ-56][risk=no] Update liquibase statement so that we can create the unique constraint by @rushtong in #2338
• [DCJ-56] Adds endpoint to DELETE a DAC from a DAA by @aarohinadkarni in #2337
• [DCJ-400-maven]: Bump the maven-dependencies group with 3 updates by @dependabot in #2339
• [DCJ-432] Consent: Add endpoint to alert SOs & Researchers of newly uploaded DAA by @aarohinadkarni in #2340
• [DCJ-400-maven]: Bump the maven-dependencies group with 3 updates by @dependabot in #2341
• [DCJ-400-maven]: Bump the maven-dependencies group with 2 updates by @dependabot in #2344
• DCJ-445: Update Row Helper Conditional by @rushtong in #2347
• [DCJ-445] Associate DAA with DAC object by @aarohinadkarni in #2342
• [DCJ-400-docker]: Bump broad-dsp-gcr-public/base/jre from 17-debian to 21-debian in the docker-dependencies group by @dependabot in #2345
• [DCJ-445] Remove extraneous print statements by @aarohinadkarni in #2348
• [DCJ-400-actions]: Bump aurelien-baudet/workflow-dispatch from 2.1.1 to 4.0.0 in the action-dependencies group by @dependabot in #2343

Full Changelog: DUOS-Release-05-21-2024...DUOS-Release-06-28-2024

DUOS-Release-05-21-2024

What's Changed

• [DUOS-1740-maven]: Bump the maven-dependencies group with 3 updates by @dependabot in #2315
• [DCJ-276][risk=no] Update api docs for api/user/me/dac/datasets/v2 by @rushtong in #2317
• [DCJ-274][risk=no] Update library vulnerabilty by @rushtong in #2318
• [DCJ-302][risk=no] Remove duplicate data submitter property by @rushtong in #2321
• [DCJ-277][risk=no] Fix update user id type in swagger by @rushtong in #2320
• [DCJ-293] Add LC to user if none for PUT DAA-LC relationship endpoint by @aarohinadkarni in #2319
• [DUOS-1740-maven]: Bump the maven-dependencies group with 4 updates by @dependabot in #2323
• [DCJ-308] Switch tags and lint yaml by @fboulnois in #2324
• [DCJ-347][risk=no] Delete Library Card DAA relationships when deleting the Library Card by @rushtong in #2325
• [DCJ-304-maven]: Bump the maven-dependencies group with 8 updates by @dependabot in #2326
• [DCJ-350] Modify bulk DAA endpoints to create LC if none on user(s) by @aarohinadkarni in #2327
• [DCJ-235] Fully populate LC on users for /api/user/role/{roleName} User endpoint by @aarohinadkarni in #2328
• [DCJ-304-maven]: Bump the maven-dependencies group with 4 updates by @dependabot in #2329

Full Changelog: DUOS-Release-04-30-2024...DUOS-Release-05-21-2024

DUOS-Release-04-30-2024

What's Changed

• [DUOS-2932][risk=no] Use V4 algorithm for all matches by @rushtong in #2286
• [DUOS-2841][DUOS-3058][risk=no] Set a timeout for Sam by @rushtong in #2289
• [DUOS-1740-dependabot]: Bump the maven-dependencies group with 3 updates by @dependabot in #2284
• [DUOS-1740][risk=no] Version updates for all actions by @rushtong in #2292
• [DUOS-1740-dependabot]: Bump broadinstitute/workflow-dispatch from 3 to 4 by @dependabot in #2295
• [DUOS-1740-dependabot]: Bump the maven-dependencies group with 6 updates by @dependabot in #2298
• [DUOS-2952] POST DAA request API by @aarohinadkarni in #2283
• [DUOS-1740-dependabot]: Bump broadinstitute/action-slack from 3.8.0 to 3.15.0 by @dependabot in #2294
• [DUOS-3067] Group GitHub Action updates by @fboulnois in #2299
• [DUOS-3048][risk=no] Populate Study Data Custodians From Dataset Properties by @rushtong in #2293
• [DUOS-3030] Test MockitoExtension Refactor for Fleshing Out DAA by @aarohinadkarni in #2300
• [DUOS-1740-maven]: Bump the maven-dependencies group with 4 updates by @dependabot in #2301
• [DUOS-3066][risk=no] Handle CCE bug when trying to notify data custodians of approved datasets by @rushtong in #2305
• [DUOS-1740-maven]: Bump com.google.cloud:google-cloud-storage from 2.36.1 to 2.37.0 in the maven-dependencies group by @dependabot in #2304
• [DUOS-998][risk=no] Standardize Dataset Association DAO by @rushtong in #2307
• [DCJ-28][risk=no] Use Sherlock to Slack DCJ team on smoke test failures, retries by @okotsopoulos in #2302
• [DUOS-3070][risk=no] Bug Fix: revert to v3 of upload-artifact action by @rushtong in #2303
• [DUOS-3073] Simplify creation of user roles in code and tests by @fboulnois in #2306
• Ddo 3624 un revert upload artifact by @jyang-broad in #2309
• [DUOS-2660][DCJ-90][risk=no] Service Test MockitoExtension Refactor by @rushtong in #2142
• [DUOS-3007][risk=no] Log stack trace when retrieving Sam user info fails by @okotsopoulos in #2311
• DCJ-169: Run Smoke Tests on PRs by @rushtong in #2312
• [DUOS-3052][DCJ-61] Add or remove DAA from a list of users by @fboulnois in #2308
• [DCJ-62] Add or remove all DAAs from user by @fboulnois in #2310
• [DUOS-3030] Create new method to flesh out DAA on LC by @aarohinadkarni in #2297
• [DCJ-15][risk=no] Make DCJ team codeowners by @okotsopoulos in #2314
• [DCJ-261][risk=no] Always delete bee by @rushtong in #2316

New Contributors

• @okotsopoulos made their first contribution in #2302
• @jyang-broad made their first contribution in #2309

Full Changelog: DUOS-Release-04-10-2024...DUOS-Release-04-30-2024

DUOS-Release-04-10-2024

What's Changed

• [DUOS-1740-dependabot]: Bump the maven-dependencies group with 20 updates by @dependabot in #2274
• [DUOS-2950] GET DAA File API by @aarohinadkarni in #2276
• [DUOS-2462][risk=no] Fixes for erroring BEE environments by @rushtong in #2282
• [DUOS-1740][risk=no] Remove unnecessary owasp suppressions by @rushtong in #2280
• [DUOS-3042][risk=no] NPE fixes for study by identifier API by @rushtong in #2281
• [DUOS-3043] Validate file in POST DAA endpoint by @aarohinadkarni in #2285
• [DUOS-3056][risk=no] Log ES errors instead of failing by @rushtong in #2287

Full Changelog: DUOS-Release-04-04-2024...DUOS-Release-04-10-2024

DUOS-Release-04-04-2024

What's Changed

• [DUOS-2910] Update Library Card model by @aarohinadkarni in #2261
• [DUOS-2949] Get by ID DAA API by @aarohinadkarni in #2263
• [DUOS-2919] Get DAA API by @aarohinadkarni in #2266
• [DUOS-2808][risk=no] Re-index datasets on study update by @rushtong in #2268
• [DUOS-3023][risk=no] Index dataset on DAC approval change by @rushtong in #2271
• [DUOS-2954] Delete link between DAA and user by @fboulnois in #2270
• [DUOS-2833][DUOS-2876] Remove the duplicate DAC ID dataset property by @rushtong in #2273
• [DUOS-2877][DUOS-2834][risk=no] Remove old PI Name dataset property in favor of the Study PI Name property by @rushtong in #2277
• [DUOS-3035] Bug Fix: Correct POST DAA endpoint annotation by @aarohinadkarni in #2275
• [DUOS-2953] PUT Library Card DAA Relationship API DAA by @aarohinadkarni in #2269
• [DUOS-3021][risk=no] Handle null roles better by @rushtong in #2279
• [DUOS-2835][DUOS-2878][risk=no] Use the url dataset property instead of the dbGap version by @rushtong in #2278

Full Changelog: DUOS-Release-03-20-2024...DUOS-Release-04-04-2024

DUOS-Release-03-20-2024

What's Changed

• [DUOS-1740-dependabot]: Bump the maven-dependencies group with 6 updates by @dependabot in #2250
• [DUOS-2948][risk=no] Clean up pact tests by @rushtong in #2251
• [DUOS-1740-dependabot]: Bump the maven-dependencies group with 4 updates by @dependabot in #2253
• [DUOS-2957][risk=no] Bug Fix: Handle string values of # of participants better by @rushtong in #2252
• [DUOS-1740][risk=no] Bug Fix: revert swagger to latest working version by @rushtong in #2254
• [DUOS-2780] System Email - DAR submitted to DAC Chair by @hams7504 in #2236
• [DUOS-2972][risk=no] Safer email filtering for TDR Approved User calls by @rushtong in #2255
• [DUOS-2909][risk=no] New Data Access Agreement Models and DAO Classes by @rushtong in #2256
• [DUOS-2924] Only send emails to data custodians and depositors by @fboulnois in #2260
• [DUOS-2951][risk=no] Post DAA API by @rushtong in #2258
• [DUOS-1479][DUOS-1480][risk=no] Remove connect data owner functionality by @rushtong in #2259
• [DUOS-3009][risk=no] Auth User NPE and Logging by @rushtong in #2265
• [DUOS-3018][risk=no] Remove User-Institution Emails by @rushtong in #2264

Full Changelog: DUOS-Release-02-21-2024...DUOS-Release-03-20-2024