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ENH: Add hybrid models for gr and loieau structures #327

Merged
merged 160 commits into from
Sep 24, 2024
Merged

ENH: Add hybrid models for gr and loieau structures #327

merged 160 commits into from
Sep 24, 2024

Commits on Jul 19, 2024

  1. Merge remote-tracking branch 'upstream/main' into enh-combine-optimizers

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    nghi-truyen committed Jul 19, 2024
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Commits on Jul 20, 2024

  1. initalize branch combine optimizers

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  2. Merge branch 'enh-hybrid-models' into enh-combine-optimizers

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Commits on Jul 21, 2024

  1. Merge remote-tracking branch 'upstream/enh-cnn-regionalization' into … 

    …enh-net-forward-pass
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    nghi-truyen committed Jul 21, 2024
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Commits on Jul 22, 2024

  1. ENH: add set, get and forward_pass methods for Net

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  2. ENH: add test net forward pass + fix doc net

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  3. Merge branch 'enh-hybrid-models' into enh-combine-optimizers

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  4. Merge branch 'enh-net-forward-pass' into enh-combine-optimizers

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    nghi-truyen committed Jul 22, 2024
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  5. Fix indent docstring net

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    nghi-truyen committed Jul 22, 2024
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  6. Merge branch 'enh-net-forward-pass' into enh-combine-optimizers

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Commits on Jul 23, 2024

  1. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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Commits on Jul 24, 2024

  1. add weight/bias_shape into trainable layer

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  2. add weight/bias_shape into trainable layer

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  3. Remove redundant in Python function sbs_optimize

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    nghi-truyen committed Jul 24, 2024
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  4. Merge remote-tracking branch 'upstream/enh-cnn-regionalization' into … 

    …enh-net-forward-pass
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  5. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  6. adaptive optimizers for all mappings

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  7. Merge remote-tracking branch 'upstream/move-optimizers-to-Python' int… 

    …o enh-combine-optimizers
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Commits on Jul 25, 2024

  1. finalize optimizer combination

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  2. Fix parameter update when using early stopping + dic api doc optimize

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    nghi-truyen committed Jul 25, 2024
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  3. Correct comment typo

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    nghi-truyen committed Jul 25, 2024
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  4. Fix comment

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    nghi-truyen committed Jul 25, 2024
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  5. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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  6. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  7. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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  8. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  9. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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    nghi-truyen committed Jul 25, 2024
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  10. Change x_train name to x in net

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  11. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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    nghi-truyen committed Jul 25, 2024
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  12. retrieve key x in control_info + fix api doc for control prior name

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    nghi-truyen committed Jul 25, 2024
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  13. Fix dtype for control_info which is applied a finalization Python fun… 

    …ction
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  14. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  15. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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    nghi-truyen committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. improve unbounded check for finalize_get_control_info function

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Commits on Jul 29, 2024

  1. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  2. Generate baseline

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  3. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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    nghi-truyen committed Jul 29, 2024
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  4. Fix errors occured when merging branch

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    nghi-truyen committed Jul 29, 2024
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  5. Fix callback argument in _gradient_based_optimize_problem

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Commits on Jul 30, 2024

  1. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  2. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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Commits on Jul 31, 2024

  1. Fix doc net

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  2. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  3. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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    nghi-truyen committed Jul 31, 2024
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  4. Fix raise message net.set_weight_bias

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  5. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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    nghi-truyen committed Jul 31, 2024
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  6. Fix error in previous merge

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  7. Add choices to raise error when using sbs optimizer for hybrid struct… 

    …ures
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Commits on Aug 2, 2024

  1. Merge branch 'enh-hybrid-models' into enh-net-forward-pass: 

    Change hybrid structure name
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  2. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings:

- Change hybrid structure name
- Ignore baseline conflicts
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  3. Merge branch 'enh-hybrid-models' into enh-net-forward-pass: 

    - More flexible NN structure for hybrid models
- Ignore conflicts on baseline
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  4. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings:

- Flexible structure for nn_parameters
- Ignore baseline conflicts
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  5. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  6. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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Commits on Aug 3, 2024

  1. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  2. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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  3. Generic check optimizer in case of hybrid models

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  4. ENH: add random_state to set_weight and set_bias methods

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  5. Minor fix typos

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  6. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings + fix conflicts
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  7. DOC: fix optimize_options documentation

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Commits on Aug 4, 2024

  1. MAINT: remove lbfgsb fortran external file + fix verbose

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  2. MAINT: change to g format to display cost values optimize verbose

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Commits on Aug 5, 2024

  1. MAINT: change display format verbose smash.optmize

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  2. FIX: update verbose api documentation

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  3. FIX: fix float format verbose ann optimize

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  4. FIX: remove duplicated function due to merging error

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Commits on Aug 6, 2024

  1. MAINT: handle return options + fix verbose optimize: 

    - Remove iter_projg and iter_cost from return_options
- Fix verbose at last iteration sbs optimize
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  2. Fix api doc cance

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  3. FIX: make check

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  4. ENH: add callback method for optimization functions

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Commits on Aug 7, 2024

  1. FIX/ENH: fix doc default_optimize + generic doc for mapping and optim… 

    …izer
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  2. Merge branch 'enh-adaptive-opt-for-all-mappings' into enh-add-callbac… 

    …k-optimize
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  3. DOC: add example for callback optimize doc

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  4. DOC: enhance description of callback optimize doc

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  5. FIX: net key callback was missing for ann optimize

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Commits on Aug 8, 2024

  1. MAINT: remove see also default_optimize doc

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  2. Merge branch 'enh-adaptive-opt-for-all-mappings' into enh-add-callbac… 

    …k-optimize
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  3. ENH: add hybrid models for all gr and loieau structures

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  4. FIX: typos API documentation

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Commits on Aug 9, 2024

  1. FIX: typos API documentation

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  2. MAINT: remove cost_options from optimize_control_info method

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  3. Fix standardize_optimize_args calling

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  4. Fix standardize_optimize_args calling

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  5. MAINT: return a copy of intermediate control value for lbfgsb optimzie

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  6. ENH: add methods to retrieve the model parameters from contorl vector: 

    - set_control_optimize() method for retrieving the rr_parameters, rr_initial_states and nn_parameters from control value optimized by optimize() method
- set_control_bayesian_optimize() method for retrieving bayesian parameters from control value optimized by bayesian_optimize() method

TODO: add API doc and unit test for both methods.
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  7. MAINT: return a copy of intermediate control value for lbfgsb optimzie

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  8. MAINT: return a copy of intermediate control value for lbfgsb optimzie

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  9. MAINT: return a copy of intermediate control value for lbfgsb optimzie

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  10. Merge branch 'enh-add-callback-optimize' into maint-remove-cost-optio… 

    …ns-control-info
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  11. Merge branch 'enh-add-callback-optimize' into enh-retrieve-model-from… 

    …-control
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  12. Merge branch 'maint-remove-cost-options-control-info' into enh-retrie… 

    …ve-model-from-control
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  13. Merge branch 'enh-retrieve-model-from-control' into enh-hybrid-models… 

    …-gr-and-loieau-structures
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  14. FIX: fix generating api doc: 

    - Add two new methods to doc/source

TODO: complete API doc and unit test for both methods.
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  15. Merge branch 'enh-retrieve-model-from-control' into enh-hybrid-models… 

    …-gr-and-loieau-structures
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Commits on Aug 14, 2024

  1. DOC: complete API documentation for set_control methods

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  2. Merge branch 'enh-retrieve-model-from-control' into enh-hybrid-models… 

    …-gr-and-loieau-structures
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  3. FIX: returns control with random values depending on random_state ins… 

    …tead of nan for optimize control info with net
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  4. Merge branch 'enh-adaptive-opt-for-all-mappings' into enh-add-callbac… 

    …k-optimize
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  5. Merge branch 'enh-add-callback-optimize' into maint-remove-cost-optio… 

    …ns-control-info
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  6. Merge branch 'maint-remove-cost-options-control-info' into enh-retrie… 

    …ve-model-from-control
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  7. MAINT: refactorize net initialization + fix api doc for set_control m… 

    …ethods
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  8. Merge branch 'enh-retrieve-model-from-control' into enh-hybrid-models… 

    …-gr-and-loieau-structures
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  9. Merge branch 'enh-hybrid-models' into enh-net-forward-pass

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  10. Merge branch 'enh-net-forward-pass' into enh-adaptive-opt-for-all-map… 

    …pings
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  11. Merge branch 'enh-adaptive-opt-for-all-mappings' into enh-add-callbac… 

    …k-optimize
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  12. Merge branch 'enh-add-callback-optimize' into maint-remove-cost-optio… 

    …ns-control-info
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  13. Merge branch 'maint-remove-cost-options-control-info' into enh-retrie… 

    …ve-model-from-control
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  14. Fix API doc nn_parameters argument for set_control

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  15. Merge branch 'enh-retrieve-model-from-control' into enh-hybrid-models… 

    …-gr-and-loieau-structures
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  16. DOC: minor change on hydrological_module api doc

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Commits on Aug 19, 2024

  1. MAINT: change default network for optimization with ann mapping (#7) 

    * MAINT: change default net ann optimize + enhance net checking

* Fix type raise error message net
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  2. Merge branch 'maint-change-default-net' into enh-hybrid-models-gr-and… 

    …-loieau-structures
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  3. FIX: correct/update lez regionalization for ann mapping

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  4. Merge branch 'maint-change-default-net' into enh-hybrid-models-gr-and… 

    …-loieau-structures
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  5. Revert cost information user guide ann regionalization

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  6. Merge branch 'maint-change-default-net' into enh-hybrid-models-gr-and… 

    …-loieau-structures
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Commits on Sep 10, 2024

  1. MAINT: merge branch main into enh-adaptive-opt-for-all-mappings

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  2. Merge pull request #8 from nghi-truyen/merge-adaptive-opt 

    MAINT: merge branch main into enh-adaptive-opt-for-all-mappings
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  3. Re-generate baseline and fix unittest

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  4. Merge remote-tracking branch 'upstream/main' into enh-adaptive-optimi… 

    …zers
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Commits on Sep 11, 2024

  1. FIX PR: re-generate baseline and Merge remote-tracking branch 'upstre… 

    …am/main' into enh-adaptive-optimizers
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  2. Resolve merge conflict remote-tracking branch 'upstream/main' into en… 

    …h-hybrid-models-gr-and-loieau-structures
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  3. ENH: add hybrid structure grc_mlp for grc model

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  4. Apply suggestion changes from the first review of FC

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  5. Merge branch 'enh-adaptive-optimizers' into enh-add-callback-optimize

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  6. MAINT/ENH: generate baseline + add tests for callback signature into … 

    …optimize method
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Commits on Sep 12, 2024

  1. Apply suggestion changes from PAG and FC review

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  2. Apply suggestion changes from FC second review

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  3. Merge branch 'enh-adaptive-optimizers' into enh-add-callback-optimize

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  4. Merge remote-tracking branch 'upstream/main' into enh-add-callback-op… 

    …timize
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  5. Fix merge upstream/main into origin/enh-add-callback-optimize

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  6. MAINT: remove cost_options from optimize_control_info method

    @nghi-truyen
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  7. MAINT: change default network for optimization with ann mapping 

    - Change default net ann optimize
- Enhance net checking
- Correct/update lez regionalization for ann mapping
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  8. Re-generate the baseline

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  9. Merge branch 'maint-change-default-net' into enh-retrieve-model-from-… 

    …control
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  10. Fix variable name api doc

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  11. Merge branch 'enh-retrieve-model-from-control' into enh-hybrid-models… 

    …-gr-and-loieau-structures + generate baseline
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Commits on Sep 13, 2024

  1. Apply suggestion changes from FC review

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  2. Apply suggestion change from PAG review

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  3. Merge branch 'enh-add-callback-optimize' into maint-remove-cost-optio… 

    …ns-control-info
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  4. Merge remote-tracking branch 'upstream/main' into maint-remove-cost-o… 

    …ptions-control-info
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  5. Merge branch 'enh-add-callback-optimize' into maint-change-default-net

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  6. Merge remote-tracking branch 'upstream/main' into maint-change-defaul… 

    …t-net
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  7. Merge branch 'maint-remove-cost-options-control-info' into enh-retrie… 

    …ve-model-from-control
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  8. Merge branch 'maint-change-default-net' into enh-retrieve-model-from-… 

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  9. Apply suggestion changes from PAG review

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  10. Merge branch 'maint-change-default-net' into enh-retrieve-model-from-… 

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Commits on Sep 14, 2024

  1. Apply suggestion change from FC review

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  2. Merge branch 'maint-change-default-net' into enh-retrieve-model-from-… 

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  3. Merge remote-tracking branch 'upstream/main' into enh-retrieve-model-… 

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Commits on Sep 15, 2024

  1. Apply suggestion changes from FC review

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Commits on Sep 17, 2024

  1. Merge branch 'enh-retrieve-model-from-control' into enh-hybrid-models… 

    …-gr-and-loieau-structures
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  2. Merge remote-tracking branch 'upstream/main' into enh-hybrid-models-g… 

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Commits on Sep 18, 2024

  1. MAINT: Update branch + merge from main

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  2. Merge remote-tracking branch 'upstream/main' into enh-hybrid-models-g… 

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  3. Revert _version.py

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Commits on Sep 19, 2024

  1. FIX: wrong output size of the parameterization NN for grc_mlp structure

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Commits on Sep 24, 2024

  1. Merge remote-tracking branch 'upstream/main' into enh-hybrid-models-g… 

    …r-and-loieau-structures
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  2. Apply suggestion changes from FC and PAG reviews

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