Merge pull request nf-core#335 from nf-core/update-modules

Update several modules
Darcy220606 · Jan 31, 2024 · 0ffba22 · 0ffba22
2 parents ca8d503 + 1885f0f
commit 0ffba22
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Showing 18 changed files with 133 additions and 60 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -19,7 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 | ------- | ---------------- | ----------- |
 | DeepARG | 1.0.2            | 1.0.4       |
 | DeepBGC | 0.1.30           | 0.1.31      |
-| MultiQC | 1.15             | 1.18        |
+| MultiQC | 1.15             | 1.19        |
 
 ### `Deprecated`
 

diff --git a/modules.json b/modules.json
@@ -7,7 +7,7 @@
                 "nf-core": {
                     "abricate/run": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "02dd89c60aa318ad8e8b6060856e90cb66481d2c",
                         "installed_by": ["modules"]
                     },
                     "ampcombi": {
@@ -17,7 +17,7 @@
                     },
                     "ampir": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "8534344b57d22107b9a3829c92da71cb2b1329a8",
                         "installed_by": ["modules"]
                     },
                     "amplify/predict": {
@@ -63,7 +63,7 @@
                     },
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
-                        "git_sha": "bba7e362e4afead70653f84d8700588ea28d0f9e",
+                        "git_sha": "8ec825f465b9c17f9d83000022995b4f7de6fe93",
                         "installed_by": ["modules"]
                     },
                     "deeparg/downloaddata": {
@@ -98,7 +98,7 @@
                     },
                     "gunzip": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
                         "installed_by": ["modules"]
                     },
                     "hamronization/abricate": {
@@ -143,7 +143,7 @@
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "4ab13872435962dadc239979554d13709e20bf29",
+                        "git_sha": "8ec825f465b9c17f9d83000022995b4f7de6fe93",
                         "installed_by": ["modules"]
                     },
                     "prodigal": {
@@ -153,12 +153,12 @@
                     },
                     "prokka": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "49ebda931c36c2b282f7958d00e1236b751f1031",
                         "installed_by": ["modules"]
                     },
                     "pyrodigal": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "0e70547d116de782ec3825f1a449a56abb894482",
                         "installed_by": ["modules"]
                     },
                     "rgi/main": {
@@ -173,7 +173,7 @@
                     },
                     "untar": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "e719354ba77df0a1bd310836aa2039b45c29d620",
                         "installed_by": ["modules"]
                     }
                 }

diff --git a/modules/nf-core/abricate/run/meta.yml b/modules/nf-core/abricate/run/meta.yml
diff --git a/modules/nf-core/ampir/main.nf b/modules/nf-core/ampir/main.nf
diff --git a/modules/nf-core/ampir/meta.yml b/modules/nf-core/ampir/meta.yml
diff --git a/modules/nf-core/custom/dumpsoftwareversions/environment.yml b/modules/nf-core/custom/dumpsoftwareversions/environment.yml
diff --git a/modules/nf-core/custom/dumpsoftwareversions/main.nf b/modules/nf-core/custom/dumpsoftwareversions/main.nf
diff --git a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test
diff --git a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap
diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml
diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
diff --git a/modules/nf-core/multiqc/meta.yml b/modules/nf-core/multiqc/meta.yml
diff --git a/modules/nf-core/multiqc/tests/main.nf.test b/modules/nf-core/multiqc/tests/main.nf.test
diff --git a/modules/nf-core/prokka/main.nf b/modules/nf-core/prokka/main.nf
diff --git a/modules/nf-core/pyrodigal/environment.yml b/modules/nf-core/pyrodigal/environment.yml
diff --git a/modules/nf-core/pyrodigal/main.nf b/modules/nf-core/pyrodigal/main.nf
diff --git a/modules/nf-core/pyrodigal/meta.yml b/modules/nf-core/pyrodigal/meta.yml
diff --git a/modules/nf-core/untar/environment.yml b/modules/nf-core/untar/environment.yml