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42 Open 163 Closed
42 Open 163 Closed
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Issues list

Unable to Load IMC data (ome.tiff format) properly. Image data appears 0 only... bug Something isn't working
#409 opened Jan 24, 2024 by Aakanksha-Rana
pachage install bug bug Something isn't working
#406 opened Dec 31, 2023 by Yicijiuhaobala
AttributeError pathml.core
#402 opened Dec 13, 2023 by tdenize
8
Compatibility Query: Using PathML for X-Ray Images with Missing 'TotalPixelMatrixRows' Attribute bug Something isn't working
#401 opened Dec 13, 2023 by xinyuejohn
add install instructions for windows enhancement New feature or request
#399 opened Dec 12, 2023 by Dana-Farber
1
Algorithm for Improved Spectral Unmixing with Reference Image Integration enhancement New feature or request
#375 opened Nov 9, 2023 by sreekarreddydfci
Add Installation and Setup Instructions for Mamba alongside Conda bug Something isn't working
#370 opened Oct 23, 2023 by sreekarreddydfci
@sreekarreddydfci
1
Use updated openslide v4.0.0 dependencies Pull requests that update a dependency file
#368 opened Oct 16, 2023 by jacob-rosenthal
@jamesgwen
1
Unable to read in all image layers in .vdi file, only index 0 is read in bug Something isn't working
#364 opened Aug 7, 2023 by RYY0722
3
Implement Tile Stitching Feature in Image Preprocessing enhancement New feature or request
#363 opened Jul 26, 2023 by sreekarreddydfci
@sreekarreddydfci
Make a smaller docker image enhancement New feature or request
#357 opened Jun 24, 2023 by Dana-Farber
@jacob-rosenthal @achowdhury364
Need assistance with running Pathml package via Colab or Docker and resolving errors
#350 opened May 15, 2023 by DRSEI
6
necrotic tissue detection for HE and multiplex imaging enhancement New feature or request
#345 opened Jan 26, 2023 by YubinXie
Support GPUs on Docker installation enhancement New feature or request
#343 opened Jan 10, 2023 by Dana-Farber
@jacob-rosenthal
How to implement HoVer-Net Model in TIAToolBox?
#342 opened Dec 15, 2022 by WilliWespe
How to train hovernet starting with semantic-level mask image? enhancement New feature or request
#339 opened Dec 1, 2022 by OmarAshkar
3
Deepcell segmentation without cytoplasm channel enhancement New feature or request
#338 opened Nov 10, 2022 by jamesMo84
1
Running preprocessing pipeline on Tiles object enhancement New feature or request
#332 opened Oct 14, 2022 by PaulScemama
15
Can Pathml support or read in “.TMAP” formatted WSI file? enhancement New feature or request
#331 opened Sep 5, 2022 by liuxiaoping2020
1
best way to extract anndata ( h5ad ) from hdf5 file enhancement New feature or request
#330 opened Sep 2, 2022 by afshinmoradi
1
Question about the StainNormalizationHE transform
#329 opened Aug 22, 2022 by ckv1110
1
annotated-dic enhancement New feature or request
#326 opened Aug 15, 2022 by afshinmoradi
3
Extend QuantifyMIF to also support brightfield images enhancement New feature or request
#318 opened Jun 22, 2022 by jacob-rosenthal
Rename the default kernel in docker & create intro splash page for 127.0.0.1:8888 documentation Improvements or additions to documentation enhancement New feature or request
#317 opened Jun 21, 2022 by Dana-Farber
1
SegmentMIF fails and causes program to hang bug Something isn't working
#299 opened Feb 10, 2022 by surya-narayanan
4
ProTip! Exclude everything labeled bug with -label:bug.