MAINT: update pip constraints and pre-commit (#528)

* FIX: downgrade NumPy if installing TensorFlow
* MAINT: address `mypy` and Ruff errors
* MAINT: ignore `jax.xla_computation` warning
  https://github.com/ComPWA/tensorwaves/actions/runs/9641339414/job/26586798317?pr=528
* MAINT: simplify `uv pip` install in RTD config
* MAINT: sort keys in RTD config

---------

Co-authored-by: GitHub <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.constraints/py3.10.txt

@@ -1,24 +1,24 @@
 # This file was autogenerated by uv via the following command:
 #    uv pip compile pyproject.toml -o .constraints/py3.10.txt --all-extras --no-annotate --python-version=3.10 --no-emit-package setuptools
 absl-py==2.1.0
-accessible-pygments==0.0.4
+accessible-pygments==0.0.5
 alabaster==0.7.16
-ampform==0.15.0
-anyio==4.3.0
+ampform==0.15.4
+anyio==4.4.0
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.3.0
 asttokens==2.4.1
 astunparse==1.6.3
 async-lru==2.0.4
 attrs==23.2.0
-babel==2.14.0
+babel==2.15.0
 beautifulsoup4==4.12.3
-black==24.3.0
+black==24.4.2
 bleach==6.1.0
 cachetools==5.3.3
 cattrs==23.2.3
-certifi==2024.2.2
+certifi==2024.6.2
 cffi==1.16.0
 cfgv==3.4.0
 chardet==5.2.0
@@ -28,175 +28,174 @@ cloudpickle==3.0.0
 colorama==0.4.6
 comm==0.2.2
 contourpy==1.2.1
-coverage==7.4.4
+coverage==7.5.4
 cycler==0.12.1
 debugpy==1.8.1
 decorator==5.1.1
 defusedxml==0.7.1
 distlib==0.3.8
 dm-tree==0.1.8
 docstring-to-markdown==0.15
-docutils==0.20.1
-exceptiongroup==1.2.0
-execnet==2.1.0
+docutils==0.21.2
+exceptiongroup==1.2.1
+execnet==2.1.1
 executing==2.0.1
-fastjsonschema==2.19.1
-filelock==3.13.3
+fastjsonschema==2.20.0
+filelock==3.15.4
 flatbuffers==24.3.25
-fonttools==4.51.0
+fonttools==4.53.0
 fqdn==1.5.1
 gast==0.5.4
 gitdb==4.0.11
 gitpython==3.1.43
 google-pasta==0.2.0
 graphviz==0.20.3
 greenlet==3.0.3
-grpcio==1.62.1
+grpcio==1.64.1
 h11==0.14.0
-h5py==3.10.0
-hepunits==2.3.3
+h5py==3.11.0
+hepunits==2.3.4
 httpcore==1.0.5
 httpx==0.27.0
-identify==2.5.35
-idna==3.6
+identify==2.5.36
+idna==3.7
 imagesize==1.4.1
-iminuit==2.25.2
-importlib-metadata==7.1.0
+iminuit==2.26.0
+importlib-metadata==7.2.1
 iniconfig==2.0.0
 ipykernel==6.29.4
-ipympl==0.9.3
-ipython==8.23.0
+ipympl==0.9.4
+ipython==8.25.0
 ipython-genutils==0.2.0
-ipywidgets==8.1.2
+ipywidgets==8.1.3
 isoduration==20.11.0
 isort==5.13.2
-jax==0.4.26
-jaxlib==0.4.26
+jax==0.4.30
+jaxlib==0.4.30
 jedi==0.19.1
-jinja2==3.1.3
-json5==0.9.24
-jsonpointer==2.4
-jsonschema==4.21.1
+jinja2==3.1.4
+json5==0.9.25
+jsonpointer==3.0.0
+jsonschema==4.22.0
 jsonschema-specifications==2023.12.1
 jupyter==1.0.0
 jupyter-cache==1.0.0
-jupyter-client==8.6.1
+jupyter-client==8.6.2
 jupyter-console==6.6.3
 jupyter-core==5.7.2
 jupyter-events==0.10.0
-jupyter-lsp==2.2.4
-jupyter-server==2.13.0
+jupyter-lsp==2.2.5
+jupyter-server==2.14.1
 jupyter-server-mathjax==0.2.6
 jupyter-server-terminals==0.5.3
-jupyterlab==4.1.5
+jupyterlab==4.2.2
 jupyterlab-code-formatter==2.2.1
-jupyterlab-git==0.50.0
+jupyterlab-git==0.50.1
 jupyterlab-lsp==5.1.0
-jupyterlab-myst==2.3.2
+jupyterlab-myst==2.4.2
 jupyterlab-pygments==0.3.0
-jupyterlab-server==2.25.4
-jupyterlab-widgets==3.0.10
-keras==3.1.1
+jupyterlab-server==2.27.2
+jupyterlab-widgets==3.0.11
+keras==3.3.3
 kiwisolver==1.4.5
 libclang==18.1.1
-livereload==2.6.3
-llvmlite==0.42.0
+llvmlite==0.43.0
 lsprotocol==2023.0.1
 markdown==3.6
 markdown-it-py==3.0.0
 markupsafe==2.1.5
-matplotlib==3.8.4
-matplotlib-inline==0.1.6
-mdit-py-plugins==0.4.0
+matplotlib==3.9.0
+matplotlib-inline==0.1.7
+mdit-py-plugins==0.4.1
 mdurl==0.1.2
 mistune==3.0.2
 ml-dtypes==0.3.2
 mpmath==1.3.0
-mypy==1.9.0
+mypy==1.10.0
 mypy-extensions==1.0.0
-myst-nb==1.0.0
-myst-parser==2.0.0
-namex==0.0.7
+myst-nb==1.1.0
+myst-parser==3.0.1
+namex==0.0.8
 nbclient==0.6.8
-nbconvert==7.16.3
+nbconvert==7.16.4
 nbdime==4.0.1
 nbformat==5.10.4
-nbmake==1.5.3
+nbmake==1.5.4
 nest-asyncio==1.6.0
-nodeenv==1.8.0
-notebook==7.1.2
+nodeenv==1.9.1
+notebook==7.2.1
 notebook-shim==0.2.4
-numba==0.59.1
+numba==0.60.0
 numpy==1.26.4
 opt-einsum==3.3.0
 optree==0.11.0
 overrides==7.7.0
-packaging==24.0
-pandas==2.2.1
+packaging==24.1
+pandas==2.2.2
 pandocfilters==1.5.1
 parso==0.8.4
-particle==0.23.1
+particle==0.24.0
 pathspec==0.12.1
 pexpect==4.9.0
-phasespace==1.9.0
+phasespace==1.10.3
 pillow==10.3.0
-platformdirs==4.2.0
-pluggy==1.4.0
-pre-commit==3.7.0
+platformdirs==4.2.2
+pluggy==1.5.0
+pre-commit==3.7.1
 prometheus-client==0.20.0
-prompt-toolkit==3.0.43
+prompt-toolkit==3.0.47
 protobuf==4.25.3
-psutil==5.9.8
+psutil==6.0.0
 ptyprocess==0.7.0
 pure-eval==0.2.2
 py-cpuinfo==9.0.0
-pyarrow==15.0.2
+pyarrow==16.1.0
 pycparser==2.22
-pydata-sphinx-theme==0.15.2
-pygments==2.17.2
+pydata-sphinx-theme==0.15.3
+pygments==2.18.0
 pyparsing==3.1.2
-pyproject-api==1.6.1
-pytest==8.1.1
+pyproject-api==1.7.1
+pytest==8.2.2
 pytest-benchmark==4.0.0
 pytest-cov==5.0.0
 pytest-mock==3.14.0
-pytest-xdist==3.5.0
-python-constraint==1.3.1
+pytest-xdist==3.6.1
+python-constraint2==2.0.0b5
 python-dateutil==2.9.0.post0
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.1.2
-python-lsp-ruff==2.2.0
+python-lsp-ruff==2.2.1
 python-lsp-server==1.11.0
 pytoolconfig==1.3.1
 pytz==2024.1
 pyyaml==6.0.1
-pyzmq==25.1.2
-qrules==0.10.1
-qtconsole==5.5.1
+pyzmq==26.0.3
+qrules==0.10.2
+qtconsole==5.5.2
 qtpy==2.4.1
-referencing==0.34.0
-requests==2.31.0
+referencing==0.35.1
+requests==2.32.3
 rfc3339-validator==0.1.4
 rfc3986-validator==0.1.1
 rich==13.7.1
 rope==1.13.0
-rpds-py==0.18.0
-ruff==0.3.5
-scipy==1.13.0
-send2trash==1.8.2
+rpds-py==0.18.1
+ruff==0.4.10
+scipy==1.13.1
+send2trash==1.8.3
 six==1.16.0
 smmap==5.0.1
 sniffio==1.3.1
 snowballstemmer==2.2.0
 soupsieve==2.5
-sphinx==7.2.6
-sphinx-api-relink==0.0.8
-sphinx-autobuild==2024.2.4
-sphinx-book-theme==1.1.2
-sphinx-codeautolink==0.15.0
+sphinx==7.3.7
+sphinx-api-relink==0.0.9
+sphinx-autobuild==2024.4.16
+sphinx-book-theme==1.1.3
+sphinx-codeautolink==0.15.2
 sphinx-comments==0.0.3
 sphinx-copybutton==0.5.2
-sphinx-design==0.5.0
+sphinx-design==0.6.0
 sphinx-thebe==0.3.1
 sphinx-togglebutton==0.3.2
 sphinxcontrib-applehelp==1.0.8
@@ -205,45 +204,49 @@ sphinxcontrib-htmlhelp==2.0.5
 sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==1.0.7
 sphinxcontrib-serializinghtml==1.1.10
-sphobjinv==2.3.1
-sqlalchemy==2.0.29
+sphobjinv==2.3.1.1
+sqlalchemy==2.0.31
 stack-data==0.6.3
-sympy==1.12
+starlette==0.37.2
+sympy==1.12.1
 tabulate==0.9.0
 tensorboard==2.16.2
 tensorboard-data-server==0.7.2
 tensorflow==2.16.1
-tensorflow-io-gcs-filesystem==0.36.0
+tensorflow-io-gcs-filesystem==0.37.0
 tensorflow-probability==0.24.0
 termcolor==2.4.0
 terminado==0.18.1
-tinycss2==1.2.1
+tinycss2==1.3.0
 tomli==2.0.1
-tornado==6.4
-tox==4.14.2
-tqdm==4.66.2
-traitlets==5.14.2
-types-protobuf==4.24.0.20240311
+tornado==6.4.1
+tox==4.15.1
+tqdm==4.66.4
+traitlets==5.14.3
+types-protobuf==5.26.0.20240422
 types-python-dateutil==2.9.0.20240316
 types-pyyaml==6.0.12.20240311
-types-requests==2.31.0.20240406
-types-tensorflow==2.15.0.20240314
-types-tqdm==4.66.0.20240106
-typing-extensions==4.11.0
+types-requests==2.32.0.20240622
+types-tensorflow==2.16.0.20240618
+types-tqdm==4.66.0.20240417
+typing-extensions==4.12.2
 tzdata==2024.1
-ujson==5.9.0
+ujson==5.10.0
 uri-template==1.3.0
-urllib3==2.2.1
-virtualenv==20.25.1
+urllib3==2.2.2
+uvicorn==0.30.1
+virtualenv==20.26.3
+watchfiles==0.22.0
 wcwidth==0.2.13
-webcolors==1.13
+webcolors==24.6.0
 webencodings==0.5.1
-websocket-client==1.7.0
-werkzeug==3.0.2
+websocket-client==1.8.0
+websockets==12.0
+werkzeug==3.0.3
 wheel==0.43.0
-widgetsnbextension==4.0.10
+widgetsnbextension==4.0.11
 wrapt==1.16.0
-zipp==3.18.1
+zipp==3.19.2
 
 # The following packages were excluded from the output:
 # setuptools