Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add script to download COVID-19 differential expression data #84

Merged

Conversation

AliSajid
Copy link
Collaborator

@AliSajid AliSajid commented Sep 21, 2024

Description

This PR adds a script dCovid_diffexp.R in the inst/script directory that explains and automates the download of the dCovid_diffexp.tsv file from Zenodo. The script provides documentation on the data source and downloads the file to the inst/extdata directory. This file contains differential gene expression data for COVID-19 patients compared to healthy controls and is used in the package vignette to demonstrate drugfindR functionality.

Additionally, this PR increments the package version to 0.99.987 in both the DESCRIPTION and codemeta.json files.

Fixes issue #80

Signed-off-by: Ali Sajid Imami [email protected]

@AliSajid AliSajid linked an issue Sep 21, 2024 that may be closed by this pull request
Copy link
Collaborator Author

AliSajid commented Sep 21, 2024

@AliSajid AliSajid changed the title docs: add a documentation file for the dCovid_diffexp.tsv file Add script to download COVID-19 differential expression data Sep 21, 2024
Copy link

graphite-app bot commented Sep 21, 2024

Graphite Automations

"Request reviewers once CI passes" took an action on this PR • (09/21/24)

3 reviewers were added to this PR based on Ali Sajid Imami's automation.

Copy link
Collaborator Author

AliSajid commented Sep 21, 2024

Merge activity

  • Sep 21, 5:57 PM EDT: @AliSajid started a stack merge that includes this pull request via Graphite.
  • Sep 21, 5:58 PM EDT: @AliSajid merged this pull request with Graphite.

@AliSajid AliSajid merged commit 61e2a67 into devel Sep 21, 2024
5 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Document the inst/extdata/dCovid_diffexp.tsv dataset
1 participant