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@bors
bors[bot] authored Jun 22, 2023
2 parents 2aacd86 + 005b898 commit 7dfef86
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4 changes: 2 additions & 2 deletions .dev/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -142,9 +142,9 @@ version = "1.6.0"

[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
git-tree-sha1 = "a5aef8d4a6e8d81f171b2bd4be5265b01384c74c"
git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.5.10"
version = "2.7.1"

[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
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2 changes: 1 addition & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -32,8 +32,8 @@ UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
[compat]
Adapt = "3"
BlockArrays = "0.16"
ClimaComms = "0.5"
CUDA = "3, 4.2.0"
ClimaComms = "0.4.2"
CubedSphere = "0.2"
DataStructures = "0.18"
DiffEqBase = "6.75"
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166 changes: 80 additions & 86 deletions docs/Manifest.toml
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130 changes: 62 additions & 68 deletions examples/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -203,15 +203,15 @@ version = "0.1.7"

[[deps.ClimaComms]]
deps = ["CUDA", "MPI"]
git-tree-sha1 = "7f3f28296a39cf99cb1372a6f1fc47b0baa1c66d"
git-tree-sha1 = "483971be380aefef7d576797508c7f3159c39775"
uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
version = "0.4.2"
version = "0.5.0"

[[deps.ClimaCore]]
deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "Rotations", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
path = ".."
uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
version = "0.10.39"
version = "0.10.41"

[[deps.ClimaCorePlots]]
deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"]
Expand All @@ -223,7 +223,7 @@ version = "0.2.5"
deps = ["ClimaComms", "ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll", "Test"]
path = "../lib/ClimaCoreTempestRemap"
uuid = "d934ef94-cdd4-4710-83d6-720549644b70"
version = "0.3.8"
version = "0.3.9"

[[deps.ClimaCoreVTK]]
deps = ["ClimaCore", "WriteVTK"]
Expand All @@ -233,9 +233,9 @@ version = "0.7.2"

[[deps.ClimaTimeSteppers]]
deps = ["CUDA", "ClimaComms", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "fe71c83dbffc6178b51c280728953d92914d441c"
git-tree-sha1 = "54b602435b0107b6c2dfe7664e0f7ff5fc78fb91"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.6"
version = "0.7.7"

[[deps.CloseOpenIntervals]]
deps = ["ArrayInterface", "Static"]
Expand Down Expand Up @@ -275,9 +275,9 @@ version = "0.12.10"

[[deps.CommonDataModel]]
deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf"]
git-tree-sha1 = "0404085d3518fc3c8ef0cb32858f6185aa9d8dff"
git-tree-sha1 = "2678b3fc170d582655a14d22867b031b6e43c2d4"
uuid = "1fbeeb36-5f17-413c-809b-666fb144f157"
version = "0.2.3"
version = "0.2.4"

[[deps.CommonSolve]]
git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c"
Expand Down Expand Up @@ -336,9 +336,9 @@ version = "0.3.1"

[[deps.CubedSphere]]
deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
git-tree-sha1 = "db9c12cb765cc048e158987388287c52baddf57d"
git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f"
uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
version = "0.2.2"
version = "0.2.3"

[[deps.DEDataArrays]]
deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "RecursiveArrayTools", "SciMLBase", "StaticArrays"]
Expand Down Expand Up @@ -423,9 +423,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[deps.Distributions]]
deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b"
git-tree-sha1 = "4ed4a6df2548a72f66e03f3a285cd1f3b573035d"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.95"
version = "0.25.96"

[[deps.DocStringExtensions]]
deps = ["LibGit2"]
Expand Down Expand Up @@ -455,11 +455,17 @@ git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608"
uuid = "b305315f-e792-5b7a-8f41-49f472929428"
version = "1.0.1"

[[deps.ExceptionUnwrapping]]
deps = ["Test"]
git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96"
uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4"
version = "0.1.9"

[[deps.Expat_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c"
uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.4.8+0"
version = "2.5.0+0"

[[deps.ExponentialUtilities]]
deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SnoopPrecompile", "SparseArrays", "libblastrampoline_jll"]
Expand All @@ -486,9 +492,9 @@ version = "4.4.2+2"

[[deps.FFTW]]
deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c"
git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7"
uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
version = "1.7.0"
version = "1.7.1"

[[deps.FFTW_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -587,9 +593,9 @@ version = "3.3.8+0"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
git-tree-sha1 = "a3351bc577a6b49297248aadc23a4add1097c2ac"
git-tree-sha1 = "745847e65e72a475716952f0a8a7258d42338ce9"
uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
version = "8.7.1"
version = "8.8.0"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
Expand Down Expand Up @@ -674,10 +680,10 @@ uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
version = "1.12.2+2"

[[deps.HTTP]]
deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272"
deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
git-tree-sha1 = "2613d054b0e18a3dea99ca1594e9a3960e025da4"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "1.9.6"
version = "1.9.7"

[[deps.HarfBuzz_jll]]
deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"]
Expand All @@ -687,9 +693,9 @@ version = "2.8.1+1"

[[deps.HostCPUFeatures]]
deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"]
git-tree-sha1 = "734fd90dd2f920a2f1921d5388dcebe805b262dc"
git-tree-sha1 = "d38bd0d9759e3c6cfa19bdccc314eccf8ce596cc"
uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0"
version = "0.1.14"
version = "0.1.15"

[[deps.HypergeometricFunctions]]
deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
Expand Down Expand Up @@ -788,9 +794,9 @@ version = "0.2.1+0"

[[deps.KernelAbstractions]]
deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4"
git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1"
uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
version = "0.9.4"
version = "0.9.6"

[[deps.Krylov]]
deps = ["LinearAlgebra", "Printf", "SparseArrays"]
Expand Down Expand Up @@ -853,9 +859,9 @@ version = "1.9.0"

[[deps.Latexify]]
deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"]
git-tree-sha1 = "099e356f267354f46ba65087981a77da23a279b7"
git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe"
uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316"
version = "0.16.0"
version = "0.16.1"

[[deps.LayoutPointers]]
deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"]
Expand Down Expand Up @@ -944,10 +950,10 @@ uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.35.0+0"

[[deps.Libtiff_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713"
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a"
uuid = "89763e89-9b03-5906-acba-b20f662cd828"
version = "4.4.0+0"
version = "4.5.1+1"

[[deps.Libuuid_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1000,9 +1006,9 @@ version = "0.12.110"

[[deps.MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9"
git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b"
uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
version = "2022.2.0+0"
version = "2023.1.0+0"

[[deps.MPI]]
deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PrecompileTools", "Requires", "Serialization", "Sockets"]
Expand All @@ -1012,9 +1018,9 @@ version = "0.20.10"

[[deps.MPICH_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
git-tree-sha1 = "d790fbd913f85e8865c55bf4725aff197c5155c8"
git-tree-sha1 = "8a5b4d2220377d1ece13f49438d71ad20cf1ba83"
uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4"
version = "4.1.1+1"
version = "4.1.2+0"

[[deps.MPIPreferences]]
deps = ["Libdl", "Preferences"]
Expand All @@ -1024,9 +1030,9 @@ version = "0.1.8"

[[deps.MPItrampoline_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
git-tree-sha1 = "b3dcf8e1c610a10458df3c62038c8cc3a4d6291d"
git-tree-sha1 = "6979eccb6a9edbbb62681e158443e79ecc0d056a"
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version = "5.3.0+0"
version = "5.3.1+0"

[[deps.MacroTools]]
deps = ["Markdown", "Random"]
Expand Down Expand Up @@ -1097,9 +1103,9 @@ version = "0.2.4"

[[deps.NCDatasets]]
deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"]
git-tree-sha1 = "e201ed836f4486d0a5f593e68b7621b2e24237c5"
git-tree-sha1 = "4263c4220f22e20729329838bf7e94a49d1ac32f"
uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab"
version = "0.12.16"
version = "0.12.17"

[[deps.NLSolversBase]]
deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
Expand All @@ -1115,9 +1121,9 @@ version = "4.5.1"

[[deps.NNlib]]
deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"]
git-tree-sha1 = "99e6dbb50d8a96702dc60954569e9fe7291cc55d"
git-tree-sha1 = "72240e3f5ca031937bd536182cb2c031da5f46dd"
uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
version = "0.8.20"
version = "0.8.21"

[[deps.NVTX]]
deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"]
Expand Down Expand Up @@ -1241,9 +1247,9 @@ version = "0.12.3"

[[deps.Parsers]]
deps = ["Dates", "PrecompileTools", "UUIDs"]
git-tree-sha1 = "a5aef8d4a6e8d81f171b2bd4be5265b01384c74c"
git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.5.10"
version = "2.7.1"

[[deps.Pipe]]
git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d"
Expand Down Expand Up @@ -1281,9 +1287,9 @@ version = "1.3.5"

[[deps.Plots]]
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
git-tree-sha1 = "ceb1ec8d4fbeb02f8817004837d924583707951b"
git-tree-sha1 = "75ca67b2c6512ad2d0c767a7cfc55e75075f8bbc"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.38.15"
version = "1.38.16"

[[deps.Polyester]]
deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"]
Expand Down Expand Up @@ -1343,12 +1349,6 @@ git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.8.2"

[[deps.Quaternions]]
deps = ["LinearAlgebra", "Random", "RealDot"]
git-tree-sha1 = "da095158bdc8eaccb7890f9884048555ab771019"
uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
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[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
Expand All @@ -1369,12 +1369,6 @@ git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.5.3"

[[deps.RealDot]]
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[[deps.RecipesBase]]
deps = ["PrecompileTools"]
git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff"
Expand Down Expand Up @@ -1440,12 +1434,6 @@ git-tree-sha1 = "9fb3462240d2898be5d4acf8925e47f70ec64d07"
uuid = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74"
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[[deps.Rotations]]
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[[deps.RuntimeGeneratedFunctions]]
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git-tree-sha1 = "237edc1563bbf078629b4f8d194bd334e97907cf"
Expand Down Expand Up @@ -1526,9 +1514,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

[[deps.SortingAlgorithms]]
deps = ["DataStructures"]
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git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
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version = "1.1.0"
version = "1.1.1"

[[deps.SparseArrays]]
deps = ["LinearAlgebra", "Random"]
Expand Down Expand Up @@ -1625,9 +1613,9 @@ version = "1.10.1"

[[deps.TaylorSeries]]
deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
git-tree-sha1 = "87baeec9ad6273ed8040a93fbbbaa039fa955f1f"
git-tree-sha1 = "c274151bde5a608bb329d76160a9344af707bfb4"
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version = "0.15.1"

[[deps.TempestRemap_jll]]
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Expand Down Expand Up @@ -1790,6 +1778,12 @@ git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.34+0"

[[deps.XZ_jll]]
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uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.4.3+0"

[[deps.Xorg_libX11_jll]]
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git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
Expand Down
8 changes: 5 additions & 3 deletions examples/hybrid/box/bubble_3d_invariant_rhoe.jl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -482,8 +482,8 @@ function bubble_3d_invariant_ρe(ARGS, comms_ctx, ::Type{FT}) where {FT}
Plots.GRBackend()

dir =
comms_ctx.device isa ClimaComms.CPUDevice ? "bubble_3d_invariant_rhoe" :
"gpu_bubble_3d_invariant_rhoe"
comms_ctx.device isa ClimaComms.AbstractCPUDevice ?
"bubble_3d_invariant_rhoe" : "gpu_bubble_3d_invariant_rhoe"
path = joinpath(@__DIR__, "output", dir)
mkpath(path)

Expand Down Expand Up @@ -525,7 +525,9 @@ function bubble_3d_invariant_ρe(ARGS, comms_ctx, ::Type{FT}) where {FT}
cpu_hv_center_space, cpu_hv_face_space, cpu_horztopology =
hvspace_3D(
sim_params,
ClimaComms.SingletonCommsContext(ClimaComms.CPUDevice()),
ClimaComms.SingletonCommsContext(
ClimaComms.CPUSingleThreaded(),
),
)

plotfield = ones(cpu_hv_center_space)
Expand Down
3 changes: 0 additions & 3 deletions examples/hybrid/driver.jl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -74,9 +74,6 @@ if z_stretch_string == "stretched"
test_file_name = "$(z_stretch_string)_$(test_file_name)"
end

import ClimaCore: enable_threading
enable_threading() = false

if haskey(ENV, "RESTART_FILE")
restart_file_name = ENV["RESTART_FILE"]
if is_distributed
Expand Down
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