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Add new MatrixFields module, along with unit tests and performance tests
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dennisYatunin committed Jul 13, 2023
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26 changes: 26 additions & 0 deletions .buildkite/pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -494,6 +494,32 @@ steps:
agents:
slurm_gpus: 1

- group: "Unit: MatrixFields"
steps:

- label: "Unit: BandMatrixRow"
key: unit_band_matrix_row
command: "julia --color=yes --check-bounds=yes --project=test test/MatrixFields/band_matrix_row.jl"

- label: "Unit: rmul_with_projection"
key: unit_rmul_with_projection
command: "julia --color=yes --check-bounds=yes --project=test test/MatrixFields/rmul_with_projection.jl"

- label: "Unit: field2arrays"
key: unit_field2arrays
command: "julia --color=yes --check-bounds=yes --project=test test/MatrixFields/field2arrays.jl"

- label: "Unit: matrix field broadcasting (CPU)"
key: unit_matrix_field_broadcasting_cpu
command: "julia --color=yes --check-bounds=yes --project=test test/MatrixFields/matrix_field_broadcasting.jl"

- label: "Unit: matrix field broadcasting (GPU)"
key: unit_matrix_field_broadcasting_gpu
command: "julia --color=yes --project=test test/MatrixFields/matrix_field_broadcasting.jl"
agents:
slurm_gpus: 1
slurm_mem: 20GB

- group: "Unit: Hypsography"
steps:

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2 changes: 2 additions & 0 deletions Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@ version = "0.10.43"

[deps]
Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
Expand All @@ -31,6 +32,7 @@ UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"

[compat]
Adapt = "3"
BandedMatrices = "0.17"
BlockArrays = "0.16"
ClimaComms = "0.5"
CUDA = "3, 4.2.0"
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32 changes: 10 additions & 22 deletions benchmarks/bickleyjet/Manifest.toml
Original file line number Diff line number Diff line change
Expand Up @@ -52,6 +52,12 @@ git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66"
uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"
version = "0.4.2"

[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"]
git-tree-sha1 = "9ad46355045491b12eab409dee73e9de46293aa2"
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version = "0.17.28"

[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

Expand Down Expand Up @@ -150,10 +156,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
version = "0.4.2"

[[deps.ClimaCore]]
deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "Rotations", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
path = "../.."
uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
version = "0.10.39"
version = "0.10.40"

[[deps.CloseOpenIntervals]]
deps = ["Static", "StaticArrayInterface"]
Expand Down Expand Up @@ -773,9 +779,9 @@ version = "0.1.8"

[[deps.MPItrampoline_jll]]
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version = "5.3.0+0"
version = "5.3.0+1"

[[deps.MacroTools]]
deps = ["Markdown", "Random"]
Expand Down Expand Up @@ -1012,12 +1018,6 @@ git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
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Expand All @@ -1038,12 +1038,6 @@ git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.5.3"

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[[deps.RecipesBase]]
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git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff"
Expand Down Expand Up @@ -1097,12 +1091,6 @@ git-tree-sha1 = "9fb3462240d2898be5d4acf8925e47f70ec64d07"
uuid = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74"
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version = "1.5.1"

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Expand Down
42 changes: 21 additions & 21 deletions docs/Manifest.toml
Original file line number Diff line number Diff line change
Expand Up @@ -98,6 +98,12 @@ git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66"
uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"
version = "0.4.2"

[[deps.BandedMatrices]]
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uuid = "aae01518-5342-5314-be14-df237901396f"
version = "0.17.28"

[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

Expand Down Expand Up @@ -216,10 +222,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
version = "0.5.0"

[[deps.ClimaCore]]
deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
path = ".."
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version = "0.10.41"
version = "0.10.42"

[[deps.ClimaCoreMakie]]
deps = ["ClimaCore", "Makie"]
Expand Down Expand Up @@ -312,9 +318,9 @@ version = "0.3.0"

[[deps.Compat]]
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version = "4.6.1"
version = "4.7.0"

[[deps.CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
Expand Down Expand Up @@ -620,9 +626,9 @@ version = "3.3.8+0"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
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version = "8.8.1"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
Expand Down Expand Up @@ -1047,10 +1053,10 @@ uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.35.0+0"

[[deps.Libtiff_jll]]
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git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a"
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713"
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[[deps.Libuuid_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1103,9 +1109,9 @@ version = "1.0.0"

[[deps.LoopVectorization]]
deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
git-tree-sha1 = "cdd207c26d86952949f1ac65b21baf078cc1937a"
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version = "0.12.161"
version = "0.12.162"

[[deps.MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1759,9 +1765,9 @@ version = "0.3.9"

[[deps.SpecialFunctions]]
deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
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version = "2.2.0"
version = "2.3.0"

[[deps.StableHashTraits]]
deps = ["CRC32c", "Compat", "Dates", "SHA", "Tables", "TupleTools", "UUIDs"]
Expand Down Expand Up @@ -1877,9 +1883,9 @@ version = "1.10.1"

[[deps.TaylorSeries]]
deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
git-tree-sha1 = "c274151bde5a608bb329d76160a9344af707bfb4"
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Expand Down Expand Up @@ -2052,12 +2058,6 @@ git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
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git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
Expand Down
28 changes: 11 additions & 17 deletions examples/Manifest.toml
Original file line number Diff line number Diff line change
Expand Up @@ -208,10 +208,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
version = "0.5.0"

[[deps.ClimaCore]]
deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
path = ".."
uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
version = "0.10.41"
version = "0.10.42"

[[deps.ClimaCorePlots]]
deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"]
Expand Down Expand Up @@ -593,9 +593,9 @@ version = "3.3.8+0"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
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[[deps.GPUArraysCore]]
deps = ["Adapt"]
Expand Down Expand Up @@ -950,10 +950,10 @@ uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.35.0+0"

[[deps.Libtiff_jll]]
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Expand Down Expand Up @@ -1530,9 +1530,9 @@ version = "1.21.0"

[[deps.SpecialFunctions]]
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[[deps.SplittablesBase]]
deps = ["Setfield", "Test"]
Expand Down Expand Up @@ -1613,9 +1613,9 @@ version = "1.10.1"

[[deps.TaylorSeries]]
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Expand Down Expand Up @@ -1778,12 +1778,6 @@ git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
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version = "1.1.34+0"

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git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
Expand Down
28 changes: 11 additions & 17 deletions perf/Manifest.toml
Original file line number Diff line number Diff line change
Expand Up @@ -203,10 +203,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
version = "0.5.0"

[[deps.ClimaCore]]
deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
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Expand Down Expand Up @@ -623,9 +623,9 @@ version = "3.3.8+0"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
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version = "8.8.1"

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Expand Down Expand Up @@ -1003,10 +1003,10 @@ uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.35.0+0"

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Expand Down Expand Up @@ -1641,9 +1641,9 @@ version = "1.21.0"

[[deps.SpecialFunctions]]
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Expand Down Expand Up @@ -1729,9 +1729,9 @@ version = "1.10.1"

[[deps.TaylorSeries]]
deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
git-tree-sha1 = "c274151bde5a608bb329d76160a9344af707bfb4"
git-tree-sha1 = "50718b4fc1ce20cecf28d85215028c78b4d875c2"
uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
version = "0.15.1"
version = "0.15.2"

[[deps.TempestRemap_jll]]
deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll", "Pkg"]
Expand Down Expand Up @@ -1894,12 +1894,6 @@ git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.34+0"

[[deps.XZ_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "8abe223c2549ea70be752b20a53aa236a7868eb0"
uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.4.3+0"

[[deps.Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
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1 change: 1 addition & 0 deletions src/ClimaCore.jl
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@ include("Topologies/Topologies.jl")
include("Spaces/Spaces.jl")
include("Fields/Fields.jl")
include("Operators/Operators.jl")
include("MatrixFields/MatrixFields.jl")
include("Hypsography/Hypsography.jl")
include("Limiters/Limiters.jl")
include("InputOutput/InputOutput.jl")
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