format YAML files

config/default_configs/default_config.yml

@@ -40,14 +40,14 @@ scalar_hyperdiffusion_coefficient:
 topography:
   help: "Define the surface elevation profile [`NoWarp`,`Earth`,`DCMIP200`,`Agnesi`]"
   value: "NoWarp"
-mesh_warp_type: 
+mesh_warp_type:
   help: "Sets the interior mesh warp method [`Linear`, `SLEVE`]"
   value: "Linear"
-sleve_eta: 
-  help: "If SLEVE coordinates are chosen, sets the `ηₕ` parameter (if z/z_top > ηₕ, no warping is applied)" 
+sleve_eta:
+  help: "If SLEVE coordinates are chosen, sets the `ηₕ` parameter (if z/z_top > ηₕ, no warping is applied)"
   value: 0.7
-sleve_s: 
-  help: "If SLEVE coordinates are chosen, sets `s`, the warping decay scale parameter" 
+sleve_s:
+  help: "If SLEVE coordinates are chosen, sets `s`, the warping decay scale parameter"
   value: 10.0
 topo_smoothing:
   help: "Choose whether to order-2 smoothing on the LGL mesh"

config/default_configs/default_edmf_config.yml

@@ -37,4 +37,4 @@ edmfx_sgs_diffusive_flux:
   value: false
 updraft_number:
   help: "Sets the number of updrafts for the EDMF scheme"
-  value: 1
+  value: 1

config/default_configs/default_perf.yml

@@ -13,4 +13,4 @@ precip_model: "0M"
 dt_save_to_sol: "Inf"
 rad: "allskywithclear"
 warn_allocations_diagnostics: true
-log_progress: false
+log_progress: false

config/gpu_configs/gpu_aquaplanet_diagedmf.yml

@@ -7,23 +7,23 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: equil 
-surface_setup: DefaultMoninObukhov 
+moist: equil
+surface_setup: DefaultMoninObukhov
 rad: allskywithclear
 idealized_insolation: false
 dt_rad: 1hours
 dt_cloud_fraction: 1hours
-turbconv: diagnostic_edmfx 
+turbconv: diagnostic_edmfx
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
 prognostic_tke: true
-edmfx_upwinding: first_order 
-edmfx_entr_model: "Generalized" 
-edmfx_detr_model: "Generalized" 
-edmfx_nh_pressure: true 
+edmfx_upwinding: first_order
+edmfx_entr_model: "Generalized"
+edmfx_detr_model: "Generalized"
+edmfx_nh_pressure: true
 edmfx_sgs_mass_flux: true
 edmfx_sgs_diffusive_flux: true
 precip_model: 0M
-dt: 100secs 
-t_end: 12hours 
+dt: 100secs
+t_end: 12hours
 toml: [toml/diagnostic_edmfx_box.toml]

config/gpu_configs/gpu_aquaplanet_dyamond.yml

@@ -6,18 +6,18 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: "equil" 
-precip_model: "0M" 
-rad: "allskywithclear" 
+moist: "equil"
+precip_model: "0M"
+rad: "allskywithclear"
 idealized_insolation: false
 dt_rad: "1hours"
 dt_cloud_fraction: "1hours"
 vert_diff: "FriersonDiffusion"
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
-surface_setup: "DefaultMoninObukhov" 
+surface_setup: "DefaultMoninObukhov"
 rayleigh_sponge: true
-dt: "100secs" 
+dt: "100secs"
 t_end: "12hours"
-job_id: "gpu_aquaplanet_dyamond" 
+job_id: "gpu_aquaplanet_dyamond"
 toml: [toml/longrun_aquaplanet_dyamond.toml]

config/gpu_configs/gpu_aquaplanet_dyamond_ss_2process.yml

@@ -6,18 +6,18 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: "equil" 
-precip_model: "0M" 
-rad: "allskywithclear" 
+moist: "equil"
+precip_model: "0M"
+rad: "allskywithclear"
 idealized_insolation: false
 dt_rad: "1hours"
 dt_cloud_fraction: "1hours"
 vert_diff: "FriersonDiffusion"
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
-surface_setup: "DefaultMoninObukhov" 
+surface_setup: "DefaultMoninObukhov"
 rayleigh_sponge: true
-dt: "100secs" 
+dt: "100secs"
 t_end: "12hours"
-job_id: "gpu_aquaplanet_dyamond_ss_2process" 
+job_id: "gpu_aquaplanet_dyamond_ss_2process"
 toml: [toml/longrun_aquaplanet_dyamond.toml]

config/gpu_configs/gpu_aquaplanet_dyamond_ss_4process.yml

@@ -6,18 +6,18 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: "equil" 
-precip_model: "0M" 
-rad: "allskywithclear" 
+moist: "equil"
+precip_model: "0M"
+rad: "allskywithclear"
 idealized_insolation: false
 dt_rad: "1hours"
 dt_cloud_fraction: "1hours"
 vert_diff: "FriersonDiffusion"
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
-surface_setup: "DefaultMoninObukhov" 
+surface_setup: "DefaultMoninObukhov"
 rayleigh_sponge: true
-dt: "100secs" 
+dt: "100secs"
 t_end: "12hours"
-job_id: "gpu_aquaplanet_dyamond_ss_4process" 
+job_id: "gpu_aquaplanet_dyamond_ss_4process"
 toml: [toml/longrun_aquaplanet_dyamond.toml]

config/gpu_configs/gpu_aquaplanet_dyamond_ws_1process.yml

@@ -6,18 +6,18 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: "equil" 
-precip_model: "0M" 
-rad: "allskywithclear" 
+moist: "equil"
+precip_model: "0M"
+rad: "allskywithclear"
 idealized_insolation: false
 dt_rad: "1hours"
 dt_cloud_fraction: "1hours"
 vert_diff: "FriersonDiffusion"
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
-surface_setup: "DefaultMoninObukhov" 
+surface_setup: "DefaultMoninObukhov"
 rayleigh_sponge: true
-dt: "100secs" 
+dt: "100secs"
 t_end: "12hours"
-job_id: "gpu_aquaplanet_dyamond_ws_1process" 
+job_id: "gpu_aquaplanet_dyamond_ws_1process"
 toml: [toml/longrun_aquaplanet_dyamond.toml]

config/gpu_configs/gpu_aquaplanet_dyamond_ws_2process.yml

@@ -6,18 +6,18 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: "equil" 
-precip_model: "0M" 
-rad: "allskywithclear" 
+moist: "equil"
+precip_model: "0M"
+rad: "allskywithclear"
 idealized_insolation: false
 dt_rad: "1hours"
 dt_cloud_fraction: "1hours"
 vert_diff: "FriersonDiffusion"
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
-surface_setup: "DefaultMoninObukhov" 
+surface_setup: "DefaultMoninObukhov"
 rayleigh_sponge: true
-dt: "100secs" 
+dt: "100secs"
 t_end: "12hours"
-job_id: "gpu_aquaplanet_dyamond_ws_2process" 
+job_id: "gpu_aquaplanet_dyamond_ws_2process"
 toml: [toml/longrun_aquaplanet_dyamond.toml]

config/gpu_configs/gpu_aquaplanet_dyamond_ws_4process.yml

@@ -6,18 +6,18 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: "equil" 
-precip_model: "0M" 
-rad: "allskywithclear" 
+moist: "equil"
+precip_model: "0M"
+rad: "allskywithclear"
 idealized_insolation: false
 dt_rad: "1hours"
 dt_cloud_fraction: "1hours"
 vert_diff: "FriersonDiffusion"
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
-surface_setup: "DefaultMoninObukhov" 
+surface_setup: "DefaultMoninObukhov"
 rayleigh_sponge: true
-dt: "100secs" 
+dt: "100secs"
 t_end: "12hours"
-job_id: "gpu_aquaplanet_dyamond_ws_4process" 
+job_id: "gpu_aquaplanet_dyamond_ws_4process"
 toml: [toml/longrun_aquaplanet_dyamond.toml]

config/gpu_configs/gpu_diagnostic_edmfx_aquaplanet.yml

@@ -1,20 +1,20 @@
 dt_save_state_to_disk: "3hours"
 dt_save_to_sol: "Inf"
 job_id: gpu_diagnostic_edmfx_aquaplanet
-surface_setup: DefaultMoninObukhov 
+surface_setup: DefaultMoninObukhov
 rad: clearsky
-turbconv: diagnostic_edmfx 
+turbconv: diagnostic_edmfx
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
 prognostic_tke: true
-edmfx_upwinding: first_order 
-edmfx_entr_model: "Generalized" 
-edmfx_detr_model: "Generalized" 
-edmfx_nh_pressure: true 
+edmfx_upwinding: first_order
+edmfx_entr_model: "Generalized"
+edmfx_detr_model: "Generalized"
+edmfx_nh_pressure: true
 edmfx_sgs_mass_flux: true
 edmfx_sgs_diffusive_flux: true
-moist: equil 
+moist: equil
 precip_model: 0M
-dt: 100secs 
-t_end: 6hours 
+dt: 100secs
+t_end: 6hours
 toml: [toml/diagnostic_edmfx_box.toml]

config/longrun_configs/longrun_aquaplanet_dyamond.yml

@@ -3,17 +3,17 @@ z_max: 55000.0
 z_elem: 63
 dz_bottom: 30.0
 dz_top: 3000.0
-moist: "equil" 
-precip_model: "0M" 
+moist: "equil"
+precip_model: "0M"
 cloud_model: "grid_scale"
-rad: "allskywithclear" 
+rad: "allskywithclear"
 idealized_insolation: false
 dt_rad: "1hours"
-vert_diff: "true" 
-surface_setup: "DefaultMoninObukhov" 
+vert_diff: "true"
+surface_setup: "DefaultMoninObukhov"
 rayleigh_sponge: true
 dt_save_state_to_disk: "3hours"
-dt: "50secs" 
+dt: "50secs"
 t_end: "1days"
-job_id: "longrun_aquaplanet_dyamond" 
+job_id: "longrun_aquaplanet_dyamond"
 toml: [toml/longrun_aquaplanet_dyamond.toml]

config/model_configs/diagnostic_edmfx_aquaplanet.yml

@@ -1,21 +1,21 @@
 job_id: diagnostic_edmfx_aquaplanet
 surface_setup: DefaultMoninObukhov
 rad: clearsky
-turbconv: diagnostic_edmfx 
+turbconv: diagnostic_edmfx
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
 prognostic_tke: true
-edmfx_upwinding: first_order 
-edmfx_entr_model: "Generalized" 
-edmfx_detr_model: "Generalized" 
-edmfx_nh_pressure: true 
+edmfx_upwinding: first_order
+edmfx_entr_model: "Generalized"
+edmfx_detr_model: "Generalized"
+edmfx_nh_pressure: true
 edmfx_sgs_mass_flux: true
 edmfx_sgs_diffusive_flux: true
-moist: equil 
+moist: equil
 precip_model: 0M
 override_τ_precip: false
-dt: 100secs 
-t_end: 12hours 
+dt: 100secs
+t_end: 12hours
 dt_save_state_to_disk: 12hours
 regression_test: true
 toml: [toml/diagnostic_edmfx_trmm_box.toml]

config/model_configs/diagnostic_edmfx_bomex_box.yml

@@ -1,31 +1,31 @@
 job_id: "diagnostic_edmfx_bomex_box"
-initial_condition: "Bomex" 
-subsidence: "Bomex" 
-edmf_coriolis: "Bomex" 
-ls_adv: "Bomex" 
+initial_condition: "Bomex"
+subsidence: "Bomex"
+edmf_coriolis: "Bomex"
+ls_adv: "Bomex"
 surface_setup: "Bomex"
-turbconv: "diagnostic_edmfx" 
+turbconv: "diagnostic_edmfx"
 implicit_diffusion: true
 approximate_linear_solve_iters: 2
 prognostic_tke: true
-edmfx_upwinding: "first_order" 
-edmfx_entr_model: "Generalized" 
-edmfx_detr_model: "Generalized" 
-edmfx_nh_pressure: true 
+edmfx_upwinding: "first_order"
+edmfx_entr_model: "Generalized"
+edmfx_detr_model: "Generalized"
+edmfx_nh_pressure: true
 edmfx_sgs_mass_flux: true
 edmfx_sgs_diffusive_flux: true
 moist: "equil"
-config: "box" 
-hyperdiff: "true" 
-x_max: 1e8 
-y_max: 1e8 
-x_elem: 2 
-y_elem: 2 
-z_elem: 60 
-z_max: 3e3 
+config: "box"
+hyperdiff: "true"
+x_max: 1e8
+y_max: 1e8
+x_elem: 2
+y_elem: 2
+z_elem: 60
+z_max: 3e3
 z_stretch: false
-dt: "100secs" 
-t_end: "6hours" 
+dt: "100secs"
+t_end: "6hours"
 dt_save_state_to_disk: "10mins"
 toml: [toml/diagnostic_edmfx_box.toml]
 netcdf_output_at_levels: true