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Chaste · Jun 27, 2024 · 1ebc475 · 1ebc475
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diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -1,4 +1,4 @@
-# Copyright (c) 2005-2023, University of Oxford.
+# Copyright (c) 2005-2024, University of Oxford.
 # All rights reserved.
 # 
 # University of Oxford means the Chancellor, Masters and Scholars of the

diff --git a/apps/CMakeLists.txt b/apps/CMakeLists.txt
@@ -1,4 +1,4 @@
-# Copyright (c) 2005-2023, University of Oxford.
+# Copyright (c) 2005-2024, University of Oxford.
 # All rights reserved.
 # 
 # University of Oxford means the Chancellor, Masters and Scholars of the

diff --git a/setup_project.py b/setup_project.py
@@ -1,4 +1,4 @@
-"""Copyright (c) 2005-2023, University of Oxford.
+"""Copyright (c) 2005-2024, University of Oxford.
 All rights reserved.
 
 University of Oxford means the Chancellor, Masters and Scholars of the

diff --git a/src/CellSorting/DifferentialAdhesionCaSwitchingUpdateRule.cpp b/src/CellSorting/DifferentialAdhesionCaSwitchingUpdateRule.cpp
@@ -1,6 +1,6 @@
 /*
 
-Copyright (c) 2005-2016, University of Oxford.
+Copyright (c) 2005-2024, University of Oxford.
 All rights reserved.
 
 University of Oxford means the Chancellor, Masters and Scholars of the

diff --git a/src/CellSorting/DifferentialAdhesionCaSwitchingUpdateRule.hpp b/src/CellSorting/DifferentialAdhesionCaSwitchingUpdateRule.hpp
@@ -1,6 +1,6 @@
 /*
 
-Copyright (c) 2005-2016, University of Oxford.
+Copyright (c) 2005-2024, University of Oxford.
 All rights reserved.
 
 University of Oxford means the Chancellor, Masters and Scholars of the

diff --git a/src/CellSorting/RandomMotionForce.cpp b/src/CellSorting/RandomMotionForce.cpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #include "RandomMotionForce.hpp"
 
 template<unsigned DIM>

diff --git a/src/CellSorting/RandomMotionForce.hpp b/src/CellSorting/RandomMotionForce.hpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #ifndef RANDOMMOTIONFORCE_HPP_
 #define RANDOMMOTIONFORCE_HPP_
 

diff --git a/src/CylindricalCrypt/SimpleWntContactInhibitionCellCycleModel.cpp b/src/CylindricalCrypt/SimpleWntContactInhibitionCellCycleModel.cpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #include "SimpleWntContactInhibitionCellCycleModel.hpp"
 #include "CellLabel.hpp"
 #include "RandomNumberGenerator.hpp"

diff --git a/src/CylindricalCrypt/SimpleWntContactInhibitionCellCycleModel.hpp b/src/CylindricalCrypt/SimpleWntContactInhibitionCellCycleModel.hpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #ifndef SIMPLEWNTCONTACTINHIBITIONCELLCYCLEMODEL_HPP_
 #define SIMPLEWNTCONTACTINHIBITIONCELLCYCLEMODEL_HPP_
 

diff --git a/src/DeltaNotch/RadialDifferentiationModifier.cpp b/src/DeltaNotch/RadialDifferentiationModifier.cpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #include "RadialDifferentiationModifier.hpp"
 #include "DifferentiatedCellProliferativeType.hpp"
 

diff --git a/src/DeltaNotch/RadialDifferentiationModifier.hpp b/src/DeltaNotch/RadialDifferentiationModifier.hpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #ifndef RADIALDIFFERENTIATIONMODIFIER_HPP_
 #define RADIALDIFFERENTIATIONMODIFIER_HPP_
 

diff --git a/src/MorphogenMonolayer/AdhesionCaSwitchingUpdateRule.cpp b/src/MorphogenMonolayer/AdhesionCaSwitchingUpdateRule.cpp
@@ -1,6 +1,6 @@
 /*
 
-Copyright (c) 2005-2016, University of Oxford.
+Copyright (c) 2005-2024, University of Oxford.
 All rights reserved.
 
 University of Oxford means the Chancellor, Masters and Scholars of the

diff --git a/src/MorphogenMonolayer/AdhesionCaSwitchingUpdateRule.hpp b/src/MorphogenMonolayer/AdhesionCaSwitchingUpdateRule.hpp
@@ -1,6 +1,6 @@
 /*
 
-Copyright (c) 2005-2016, University of Oxford.
+Copyright (c) 2005-2024, University of Oxford.
 All rights reserved.
 
 University of Oxford means the Chancellor, Masters and Scholars of the

diff --git a/src/MorphogenMonolayer/MorphogenCellwiseSourceParabolicPde.cpp b/src/MorphogenMonolayer/MorphogenCellwiseSourceParabolicPde.cpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #include "MorphogenCellwiseSourceParabolicPde.hpp"
 
 #include "AbstractCentreBasedCellPopulation.hpp"

diff --git a/src/MorphogenMonolayer/MorphogenCellwiseSourceParabolicPde.hpp b/src/MorphogenMonolayer/MorphogenCellwiseSourceParabolicPde.hpp
@@ -1,3 +1,38 @@
+/*
+
+Copyright (c) 2005-2024, University of Oxford.
+All rights reserved.
+
+University of Oxford means the Chancellor, Masters and Scholars of the
+University of Oxford, having an administrative office at Wellington
+Square, Oxford OX1 2JD, UK.
+
+This file is part of Chaste.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+   this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ * Neither the name of the University of Oxford nor the names of its
+   contributors may be used to endorse or promote products derived from this
+   software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+*/
+
 #ifndef CELLWISESOURCEMORPHOGENPDE_HPP_
 #define CELLWISESOURCEMORPHOGENPDE_HPP_