Fixing Monolayer growth example #8
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| name: Ubuntu tests | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - '**' | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| build-and-test: | |
| if: ${{ !contains(github.event.pull_request.labels.*.name, 'ci:off') }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: "ubuntu-20.04" | |
| codename: "focal" | |
| cc: "gcc" | |
| cxx: "g++" | |
| - os: "ubuntu-22.04" | |
| codename: "jammy" | |
| cc: "gcc" | |
| cxx: "g++" | |
| - os: "ubuntu-22.04" | |
| codename: "jammy" | |
| cc: "icx" | |
| cxx: "icpx" | |
| env: | |
| CHASTE_TEST_OUTPUT: ${{ github.workspace }}/chaste-test-dir | |
| CHASTE_BUILD_DIR: ${{ github.workspace }}/Chaste/chaste-build-dir | |
| CC: ${{ matrix.cc }} | |
| CXX: ${{ matrix.cxx }} | |
| steps: | |
| - name: checkout Chaste | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'Chaste/Chaste' | |
| ref: 'develop' | |
| path: 'Chaste' | |
| - name: checkout this repo | |
| uses: actions/checkout@v4 | |
| with: | |
| path: 'Chaste/projects/OpenVT' | |
| - name: install dependencies | |
| run: | | |
| echo 'deb [signed-by=/usr/share/keyrings/chaste.asc] https://chaste.github.io/ubuntu ${{ matrix.codename }}/' | sudo tee -a /etc/apt/sources.list.d/chaste.list | |
| sudo wget -O /usr/share/keyrings/chaste.asc https://chaste.github.io/chaste.asc | |
| sudo apt update | |
| sudo apt install chaste-dependencies | |
| - name: Downgrade libexpat1 (native ubuntu-22.04 only) | |
| if: ${{ matrix.os == 'ubuntu-22.04' }} | |
| run: | | |
| if dpkg -l | grep libexpat1-dev | grep 2.4.7-1ubuntu0.3; then | |
| sudo apt-get install -y --allow-downgrades libexpat1=2.4.7-1 libexpat1-dev=2.4.7-1 | |
| fi | |
| - name: install and set up Intel LLVM compiler | |
| run: | | |
| echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null | |
| sudo apt update | |
| sudo apt install intel-oneapi-compiler-dpcpp-cpp | |
| source /opt/intel/oneapi/setvars.sh | |
| printenv >> $GITHUB_ENV | |
| if: ${{ matrix.cc == 'icx' }} | |
| - name: compiler version | |
| run: | | |
| ${CXX} --version | |
| - name: make build and test directories | |
| run: | | |
| mkdir -p ${CHASTE_BUILD_DIR} | |
| mkdir -p ${CHASTE_TEST_OUTPUT} | |
| - name: cmake configure | |
| run: cmake -DCMAKE_BUILD_TYPE=Release .. | |
| working-directory: ${{ env.CHASTE_BUILD_DIR }} | |
| - name: build project | |
| run: cmake --build . --parallel 4 --target project_OpenVT | |
| working-directory: ${{ env.CHASTE_BUILD_DIR }} | |
| - name: run project tests | |
| run: ctest -j4 -L project_OpenVT --output-on-failure | |
| working-directory: ${{ env.CHASTE_BUILD_DIR }} |