* Add original_publication_citation to preprints model and serializer

* Fix an issue where original_publication_citation was not updated

* Add unit tests

* Respond to CR:

* Rename original_publication_citation to custom_publication_citation
* Redo migration

* Redo migrations

* Update preprints to route to EOW

* Remvoe the use of preprints_dir

* Add self link and view for preprint subjects relationship (CenterForOpenScience#10619)

* add self link and view for preprint subjects relationship

* Fix permissions issue

* Add required write scopes

---------

Co-authored-by: Brian J. Geiger <[email protected]>

* Get root_folder for preprints (CenterForOpenScience#10630)

## Purpose

Make it so preprints api serialization has a root_folder

## Changes

1. Modify the view to get the root_folder in the case of preprints

## Side Effects

Should only affect preprints

## Ticket

https://openscience.atlassian.net/browse/ENG-5716

---------

Co-authored-by: Yuhuai Liu <[email protected]>
Co-authored-by: Brian J. Geiger <[email protected]>
Co-authored-by: Brian J. Geiger <[email protected]>

…rOpenScience#10650)

* Prevent users from accessing files from withdrawn registrations via API and Waterbutler

---------

Co-authored-by: Uditi Mehta <[email protected]>
Co-authored-by: Uditi Mehta <[email protected]>

- Do not record download metrics for renders

…enterForOpenScience#10650)" (CenterForOpenScience#10666)

This reverts commit 9cec4c2.

- Bump base python version from py3.6 to py3.12.
- Switch to using poetry for dependency management
- Bump most (not all) dependencies to their maximum version as of mid-March.
- Significantly update Dockerfile
- Upgrade Django to v4.2
- Generate test summary reports in CI

---------

Co-authored-by: Oleh Paduchak <[email protected]>
Co-authored-by: Mariia Lychko <[email protected]>
Co-authored-by: Longze Chen <[email protected]>

 * There were a bunch of changes made to the dataverse python module
   to get it working with the upgraded OSF. Then we ignored
   them. Avenge this injustice!

 * Rerunning `poetry lock` pulled in a new major version of indirect
   dep `django-datetime-field`. Pin the old version, b/c that seems
   like it could be break-y.

 * Update OSF version declare in pyproject.toml

 * Regenerate lockfile. Please setuptools, don't hurt 'em!

 [ENG-6021]

 * Update repository-based deps (those that pull from github.com) to
   use commitShas instead of branch names. Update in both
   pyproject.toml (for poetry) and *requirements.txt (for legacy
   installs).

 * Update metrics reports to import `elasticsearch6_dsl` instead of
   `elasticsearch_dsl`. `django-elasticsearch-metrics` was updated to
   use the ESv6-pinned version of elasticsearch_dsl. Our code was
   using the `InnerDocs` class from the v8 version of es_dsl and
   expecting it to work with the v6 version of ALL THE OTHER CLASSES
   in es_dsl. Stop doing that!

 * Fun fact: sometimes making a big dumb error will succeed
   incorrectly instead of throwing an error. Existence is a burden.

 * BTW this makes the admin metrics report return *all* the data, not
   just *some* of the data.

…roject root (CenterForOpenScience#10697)

## Purpose

Fix devenv setup for people who use virtualenv inside project root in conjuction with docker-compose

## Changes

Changed mount for `docker-compose` `requirements` service

Squashed commit of the following:

commit 4f6adce
Merge: f3925d3 4edcf8b
Author: Fitz Elliott <[email protected]>
Date:   Fri Aug 9 12:07:43 2024 -0400

    Merge branch 'hotfix/flake-error' into hotfix/pyupgrade-hotfixes-2

commit 4edcf8b
Author: Fitz Elliott <[email protected]>
Date:   Fri Aug 9 12:07:11 2024 -0400

    flake error - remove unused import

commit f3925d3
Merge: f79ea48 e7b5e4c
Author: Fitz Elliott <[email protected]>
Date:   Thu Aug 8 01:53:00 2024 -0400

    Merge branch 'hotfix/dep-bumps-2' into hotfix/pyupgrade-hotfixes-2

commit e7b5e4c
Author: Fitz Elliott <[email protected]>
Date:   Thu Aug 8 01:52:29 2024 -0400

    bump django dep

commit d810142
Author: Fitz Elliott <[email protected]>
Date:   Thu Aug 8 01:48:58 2024 -0400

    update latent transitive deps

commit f79ea48
Merge: f3c5b99 8296391
Author: Fitz Elliott <[email protected]>
Date:   Thu Aug 8 01:28:50 2024 -0400

    Merge branch 'hotfix/double-url-encoding' into hotfix/pyupgrade-hotfixes-2

     [ENG-6055]
     Closes CenterForOpenScience#10694

commit 8296391
Author: Andriy Sheredko <[email protected]>
Date:   Fri Aug 2 16:23:52 2024 +0300

    - ENG-6055 fix for double encoding files and not be able to download them

commit f3c5b99
Merge: d2b27f0 2070b6e
Author: Fitz Elliott <[email protected]>
Date:   Thu Aug 8 01:24:01 2024 -0400

    Merge branch 'hotfix/dep-bumps' into hotfix/pyupgrade-hotfixes-2

     * Bump deps for django & werkzeug

commit 2070b6e
Author: Fitz Elliott <[email protected]>
Date:   Fri Aug 2 21:30:52 2024 -0400

    make gha workflow use pyproject.toml

commit c5c0c8e
Author: Fitz Elliott <[email protected]>
Date:   Fri Aug 2 21:20:39 2024 -0400

    remove old requirements files & annotate poetry deps

commit c9b2117
Author: Fitz Elliott <[email protected]>
Date:   Fri Aug 2 20:23:49 2024 -0400

    bump werkzeug dep

commit c5fd2f3
Author: Fitz Elliott <[email protected]>
Date:   Fri Aug 2 20:21:45 2024 -0400

    bump django dep

commit 0e4950e
Author: Fitz Elliott <[email protected]>
Date:   Fri Aug 2 20:19:39 2024 -0400

    update latent transitive deps