Skip to content

Taxonomy of IT projecting excitatory neurons in the human neocortex, facilitated by Taxonomy Development Tools.

Notifications You must be signed in to change notification settings

Cellular-Semantics/human-neocortex-it-projecting-excitatory-neurons

Repository files navigation

Supercluster: IT-projecting excitatory neurons (CCN20240304)

Cellular and molecular characterization of human cortical cytoarchitecture. Supercluster: IT-projecting excitatory neurons.

Curate your taxonomy in 3 simple steps:

  1. Get Taxonomy Development Tools
  2. Load your data
  3. Browse

Get Taxonomy Development Tools

Pull the latest TDT docker image via following the steps defined in the project GitHub Container Registry.

docker pull ghcr.io/brain-bican/taxonomy-development-tools:latest

Load your data

Place your data (ex. AIT115_annotation_sheet.tsv) and configuration file (ex. ingestion_config.yaml) into your project's input_data folder.

Run following command in your project root folder to ingest your data files:

bash ./run.sh make load_data

Browse

Run following command in your project root folder to run the online data editor:

bash ./run.sh make serve

This command will print a set of logs including a log like nanobot::serve: listening on 0.0.0.0:3000. This means your web editor is ready, and you can start editing your data.

You can start browsing web taxonomy editor from: http://localhost:3000/table

For further details see Taxonomy Development Tools Documentation

About

Taxonomy of IT projecting excitatory neurons in the human neocortex, facilitated by Taxonomy Development Tools.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published