Obask refactoring

[ubyndr]

Resolves #1

Currently we have the following;

Write Makefile that:

reads CSV input - detailing datasets and author_category fields (CSV to be provided by @dosumis)
Pulls Anndata file from Census
Runs Pandasaurus to generate RDF
Run OBASK,

importing all output RDF files from step 1.
Ontologies: CL; GO; Uberon

The process is almost fully automated. User need to prepare the file list for their owl files generated via anndata2rdf container and add them to collectdata full_ontologies files.

i.e.

file:///out/local_ontologies/0054013c-290b-437e-b98e-642aa77d6ebc.owl
file:///out/local_ontologies/01afd5b8-21be-4869-a686-1fe94ff6f4d8.owl
file:///out/local_ontologies/06a7ffec-2697-4d6f-96f6-d00a34bedb3d.owl
file:///out/local_ontologies/070d3916-633e-43af-bcc6-30358a327161.owl
file:///out/local_ontologies/0b3d19b3-df06-4265-9803-82f598e59dba.owl
file:///out/local_ontologies/10bb8aaa-ebc6-4026-94ae-a33ac16b5366.owl
file:///out/local_ontologies/1af9835f-469e-452f-a91d-f42af3f91042.owl
file:///out/local_ontologies/1c6e54ca-ef0c-4acc-9891-d3b7d2cd7a0e.ow

[hkir-dev]

Should we publish our own image in Cellular Semantics or Obask Tolls instead of using the one from obophenotype

[ubyndr]

The repo has been moved from obophenotype to Cellular-Semantics recently.

[github-actions]

cl_kb_pipeline/config/dumps/neo4j2owl-config.yaml file passed validation check