Releases: CODEX-CELIDA/execution-engine
Releases · CODEX-CELIDA/execution-engine
v2.3.0
What's Changed
Feature
Fix
- dose info in nodes in
0848d88 - interval ffill until observation_window end in
4c9ade1 - display of 0 sec entries in
51d5304 - tidal volume for <110 cm height in
7833827 - displaying recommendation name in
2b4c5a5 - database timezone setting in
5c00d67 - colors, sorting, display in
531c6ab
Performance
- interval per person in
99c7d51
Refactor
Test
- adapted to measurement value forward filling until end of observation window in
a27eef6 - ffill with observation window in
14e6187
Unknown
v2.2.0
What's Changed
Feature
- added conditional filter (for dosage condition ext) in
c98e6e0 - dynamic graph display app in
a5cdd54 - added static graph display app in
9dd5450 - added execution graph json to database in
7b7bb92 - dynamic handling of time interval types (e.g. shifts) in
c2bddd3 - implemented find_overlapping_windows in
a7e6e9b - implemented temporal aggregation combination in
7b3c3d8
Fix
- type hints in
d0358f5 - made TimeIntervalType serializable in
c6ee140 - overlapping intervals for adjacent windows in
c95bdd6
Chore
- bump fastapi from 0.111.0 to 0.112.0 in
284f4d4 - bump setuptools from 70.0.0 to 72.1.0 in
71524cd - bump pytest from 8.2.1 to 8.3.2 in
c29961b - bump numpy from 1.26.4 to 2.0.1 in
d0169bc - bump psycopg[binary] from 3.1.19 to 3.2.1 in
1a0a7a1 - added default value for settings time interval in
bef1b4b
Documentation
- added time interval configuration in
72f20b0
Refactor
- renamed CriterionCombination to LogicalCriterionCombination in
eb5c576
Revert
- no explicit adding of negative intervals in
abb94dd
Test
Tests
- fixed missing timezone parameter in create_time_intervals in
266390c
Unknown
v2.1.0
What's Changed
Feature
- add quick methods for creating CombinationCriterion in
6549c18 - set person_id to BigInt in
449381b - allow override value required in
8f1d63b - add register() method to StandardVocabulary in
2670c6e - implemented ventilation observable characteristic in
273407f - implemented updated observation characteristic in
d165075 - add builder to allow individual configurations in
f964dd1
Fix
- loading both ventilation observable vs in
6b95b54 - observation vs loading in
587d112 - added default ee builder in
4ecec00 - static datetime column labels in
51a9f29 - import error in
c2f4b4f - division by zero weight in
93757f5 - parallel runner exception handling in
e7f5bcf - parallel runner exception handling in
b35af88 - removed name from assessment in
b5f5b94
Chore
- bump braces from 3.0.2 to 3.0.3 in /apps/viz-frontend in
9fbf591 - bump pydantic from 2.7.1 to 2.8.2 in
84c4c6b - bump sympy from 1.12 to 1.13.0 in
8882bc4 - update requirements in
f47e74d - prevent downcasting warning in
6a9e1e1 - updated use of deprecated methods in
c675ebc - update pre-commit in
8f5bd42
Ci
- fix semantic-release in
81cda94 - set main target branch in
73d6c37 - manual triggering of workflow in
194cc53 - fixed workflow in
10b1503
Refactor
- removed ventilation-observable characteristic in
0cb5ab2 - removed abstract methods from Criterion in
a7ac65d - add type check for converters in
ffb2672 - parser version independent from recommendation in
c7df6b2
Test
Unknown
v2.0.0
What's Changed
Feature
- implemented invalid_combinations for test v2 in
947e2de - added weight-related dosage query in
c10a1cc - allowing multiple dosages per drug action in
aabc4a8 - set recommendation versions back to latest in
9dd5097 - added version-specific ebm-cpg parsers in
0d9e7a4 - added version compare function in
22dbe5e - added drug route selection in
82098e6 - added handling of additional operators in
9fc3489 - improved code, added pyx in
9057739 - added additional operators in
0094e21 - added union with count in
96b438d - made settings configurable in
39e6164 - added versioning to recommendations/tests in
79966a7 - added debug & query logging in
e4dde1f - checking for available interval_start/interval_end in
ea0ec00 - implemented select_type for interval_portion in
755b4ac - added pool size parameter in
c1510e6 - intersection priority order: NO_DATA>POSITIVE in
72b1059 - added multiprocessing switch in
44c5557 - allow use of visit_detail table for episode of care in
720ca89 - added version, made schema dynamic in
a0174c2 - late import of matplotlib in
8c3b7fe - interval_result view uses criterion description in
97068ae
Fix
- criterion duplicate detection (removed "name" from eq) in
e971dc4 - drug_administration exclude flag for dosages in
4f77591 - task processing of empty base data intervals in
22ce873 - repr of expressions in
fa6c816 - double exclusion of drug dosages in
8e89340 - wrong attribute name in
dcd8392 - missing default parameter in
d2949d0 - checking for existence of schema first in
548b593 - unpickling of BaseExpr objects in
72d44f4 - preserving NO_DATA intervals after counting in
cbe4986 - infinite recursion due to new/init in
02bb73c - action parser v2 in
bbf21ba - explicit version in app in
ea6f5c6 - count rectangle logic in
578b300 - handling of Count expr in
6598630 - default dose: Any >1/Day in
e3324b5 - pandas behavior for chained assignment, downcasting in
ddf3c83 - using value_min=1 instead of value=1 for no frequency in
b1e5b63 - fixed paths in execute.py in
626563c - creation of celida views in
43bf5a6 - index creation with descending column in
dec2db4 - active patients selection in
dfb9b44 - added base criterion & datetime filtering to criteria queries in
632cd1b - recommendation creation from database in
a9c315d - filtering negative duration intervals in
8066ed8 - tidal volume per ideal body weight query in
942d36f - parallel runner could not pickle namedtuple from pyx in
9ecaa5e - interval normalization for storage in
d5948c9 - interval normalization for storage in
4389d80 - rectangle processing in
3dcb20f - parallel task runner in
d8cc157 - static criteria in PointInTimeCriterion in
c5aa33e - priority order when merging criterion intervals in
0af15a6 - incorrect type expected in
37f13fe - forward fill not removing last second in
0b2b61a - unique task name in
58c2ec5 - added Criterion/Expr eq/hash in
ab84a1c - fixed converter for new FHIR Timing definition in
94ac078
Chore
v1.0.0
What's Changed
Feature
- allow use of visit_detail table for episode of care in
720ca89
Fix
- fixed converter for new FHIR Timing definition in
94ac078
Chore
- updated requirements-dev.txt in
804d05c
Ci
Refactor
- updated to pendulum 3.0.0 in
2bd6c46
Tests
- omop.concepts in
20bc847
Unknown
- Bump fastapi from 0.105.0 to 0.108.0 in
ac06aa1 - Bump httpx from 0.25.2 to 0.26.0 in
d708b6d - Bump uvicorn[standard] from 0.24.0.post1 to 0.25.0 in
43f39f1 - Bump psycopg[binary] from 3.1.15 to 3.1.16 in
6c4e1d8 - Bump fastapi from 0.104.1 to 0.105.0 in
ff2f635 - Bump psycopg[binary] from 3.1.14 to 3.1.15 in
6d983e7 - Bump psycopg[binary] from 3.1.13 to 3.1.14 in
2ebdf7c - Update test.yml in
6da47e0 - Bump pandas from 2.1.3 to 2.1.4 in
da354bc - Bump pytest-env from 1.1.1 to 1.1.3 in
fa3e240 - Bump httpx from 0.25.1 to 0.25.2 in
5d61190 - skipping peep test in
6ca5e01 - all values per day must be true in
fe352bb - added pytest instructions in
0234e77 - test all values per day valid in
acc06ec - Bump psycopg[binary] from 3.1.12 to 3.1.13 in
2409e43 - quoting user/pass in db conn str in
4d53bac - Bump pandas from 2.1.1 to 2.1.3 in
fbc3404 - Bump httpx from 0.25.0 to 0.25.1 in
77b7504 - Bump sqlalchemy from 2.0.22 to 2.0.23 in
77f6f5e - Bump uvicorn[standard] from 0.23.2 to 0.24.0.post1 in
b2eef85 - Update pydantic requirement from <2.0.0 to <3.0.0 in
049c25d - Bump pytest-env from 1.1.0 to 1.1.1 in
1f10cfa - Bump fastapi from 0.104.0 to 0.104.1 in
134e9a5 - fixed tests in
ebbf806 - set pydantic to <2 in
90a0567 - version bumps in
ed263bc - refactoring, tests for commenting added in
513ced6 - updated readme in
50a677b - Bump tqdm from 4.65.0 to 4.66.1 in
b687e70 - Bump fastapi from 0.100.1 to 0.101.1 in
25632b6 - Bump uvicorn[standard] from 0.23.0 to 0.23.2 in
20df49f - Bump fastapi from 0.100.0 to 0.100.1 in
5bd8062 - Bump uvicorn[standard] from 0.22.0 to 0.23.0 in
556d13a - Bump fastapi from 0.97.0 to 0.100.0 in
b7161a2 - Bump pytest from 7.3.2 to 7.4.0 in
801633d - fixed exception reporting in
b7210a3 - added exception handling for tx server in
da68a90 - removed thrombocytopenia from test in
9ffcfc0 - fixed converter test in
cbd4d95 - Bump pytest-env from 0.8.1 to 0.8.2 in
5148063 - updated tests in
2fcef61 - fixed wrong field usage in Quantity.unit in
39c8b9b - updated testdata: added tinzaparin in
2f92574 - Bump pytest from 7.3.1 to 7.3.2 in
bae2528 - Bump fastapi from 0.95.2 to 0.97.0 in
bb99b0f - refactored fastapi app, added comments in
ed0f222 - fixed execution map test in
06836d6 - fixed rowcount logging in
0d94823 - test different cte in
1408530 - added index to recommendation_result table in
e5beaf0 - only using python3.11 in tests in
dbded94 - improved exclusion statement in
6f379c6 - improved exclusion statement in
0592e57 - improved logging in
d0964de - adapted tests to new exclusion strategy in
8eb3411 - moved exclusion to combination statements in
bf38afc - changed result db structure, added query description in
5a65e2f - added indices in
878c691 - fixed drug exposure: zero length exposure in [
11a33cc](11a33c...