test: fix tags

CCBR · Oct 20, 2023 · 7da422b · 7da422b
1 parent 8ffe127
commit 7da422b
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Showing 3 changed files with 20 additions and 2 deletions.
diff --git a/subworkflows/CCBR/filter_blacklist/main.nf b/subworkflows/CCBR/filter_blacklist/main.nf
@@ -1,7 +1,7 @@
 
 
 include { BWA_MEM        } from '../../../../modules/ccbr/bwa/mem'
-include { FILTER_ALIGNED } from '../../../../modules/ccbr/samtools/filter_aligned'
+include { FILTER_ALIGNED } from '../../../../modules/ccbr/samtools/filteraligned'
 include { BAM2FASTQ   } from '../../../../modules/ccbr/custom/bam2fastq'
 
 workflow FILTER_BLACKLIST {

diff --git a/tests/subworkflows/CCBR/filter_blacklist/main.nf b/tests/subworkflows/CCBR/filter_blacklist/main.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl = 2
 
 include { BWA_INDEX        } from "../../../../../modules/CCBR/bwa/index/main"
-include { FILTER_BLACKLIST } from "../../../../../subworkflows/CCBR/custom/filter_blacklist/main"
+include { FILTER_BLACKLIST } from "../../../../../subworkflows/CCBR/filter_blacklist/main"
 
 
 workflow test_filter_blacklist_single {

diff --git a/tests/subworkflows/CCBR/filter_blacklist/test.yml b/tests/subworkflows/CCBR/filter_blacklist/test.yml
@@ -2,18 +2,36 @@
   command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config
   tags:
     - subworkflows/filter_blacklist
+    - custom/bam2fastq
+    - custom
+    - samtools/filteraligned
+    - samtools
+    - bwa/mem
+    - bwa
   files:
     - path: output/bam2fastq/test.R1.fastq.gz
 - name: filter_blacklist test_filter_blacklist_paired
   command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_paired -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config
   tags:
     - subworkflows/filter_blacklist
+    - custom/bam2fastq
+    - custom
+    - samtools/filteraligned
+    - samtools
+    - bwa/mem
+    - bwa
   files:
     - path: output/bam2fastq/test.R1.fastq.gz
     - path: output/bam2fastq/test.R2.fastq.gz
 - name: filter_blacklist test_filter_blacklist_single stub
   command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config -stub
   tags:
     - subworkflows/filter_blacklist
+    - custom/bam2fastq
+    - custom
+    - samtools/filteraligned
+    - samtools
+    - bwa/mem
+    - bwa
   files:
     - path: output/bam2fastq/test.R1.fastq.gz