test: stub for custom/consensuspeaks module

CCBR · Nov 27, 2023 · 73705db · 73705db
1 parent 707b093
commit 73705db
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 3 deletions.
diff --git a/modules/CCBR/custom/consensuspeaks/main.nf b/modules/CCBR/custom/consensuspeaks/main.nf
@@ -30,8 +30,7 @@ process CUSTOM_CONSENSUSPEAKS {
 
 
     stub:
-    def prefix = task.ext.prefix ?: "${meta.id}"
     """
-    touch ${prefix}.bed versions.yml
+    touch ${meta.id}.${meta.group}.consensus_peaks.bed versions.yml
     """
 }
diff --git a/tests/modules/CCBR/custom/consensuspeaks/test.yml b/tests/modules/CCBR/custom/consensuspeaks/test.yml
@@ -7,5 +7,13 @@
     - "custom/consensuspeaks"
   files:
     - path: "output/custom/test.macs_broad.consensus_peaks.bed"
-      md5sum: 4d684a948335bbed948704e4be9f1abe
+      md5sum: 417447a3080df9d4ffa294b876dde640
+    - path: "output/custom/versions.yml"
+- name: "custom consensuspeaks stub"
+  command: nextflow run ./tests/modules/CCBR/custom/consensuspeaks -entry test_custom_consensuspeaks -c ./tests/config/nextflow.config -stub
+  tags:
+    - "custom"
+    - "custom/consensuspeaks"
+  files:
+    - path: "output/custom/test.macs_broad.consensus_peaks.bed"
     - path: "output/custom/versions.yml"