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refactor: rename bam_to_fastq -> bam2fastq
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modules/CCBR/custom/bam_to_fastq/main.nf → modules/CCBR/custom/bam2fastq/main.nf
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modules/CCBR/custom/bam_to_fastq/meta.yml → modules/CCBR/custom/bam2fastq/meta.yml
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,19 @@ | ||
- name: custom bam2fastq test_bam2fastq_single | ||
command: nextflow run ./tests/modules/CCBR/custom/bam2fastq -entry test_bam2fastq_single -c ./tests/config/nextflow.config | ||
tags: | ||
- custom/bam2fastq | ||
- custom | ||
files: | ||
- path: output/bam2fastq/test.R1.fastq.gz | ||
- path: output/bwa/versions.yml | ||
|
||
- name: custom bam2fastq test_bam2fastq_paired | ||
command: nextflow run ./tests/modules/CCBR/custom/bam2fastq -entry test_bam2fastq_paired -c ./tests/config/nextflow.config | ||
tags: | ||
- custom/bam2fastq | ||
- custom | ||
files: | ||
- path: output/bam2fastq/test.R1.fastq.gz | ||
- path: output/bam2fastq/test.R2.fastq.gz | ||
- path: output/bam2fastq/test.unpaired.fastq.gz | ||
- path: output/bwa/versions.yml |
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