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Create subworkflow to filter reads from blacklisted regions #69

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Create subworkflow to filter reads from blacklisted regions

Create subworkflow to filter reads from blacklisted regions #69

Triggered via pull request October 23, 2023 15:43
@kelly-sovacoolkelly-sovacool
synchronize #17
filter-blacklist-subwf
Status Failure
Total duration 9m 51s
Artifacts 1

test.yml

on: pull_request
pytest-changes
6s
pytest-changes
nf-test-changes
9s
nf-test-changes
prettier
12s
prettier
Matrix: nf-core-lint
Matrix: pytest
Matrix: nf-test
confirm-pass
2s
confirm-pass
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Annotations

5 errors and 3 warnings
pytest (subworkflows/filter_blacklist, docker)
Process completed with exit code 1.
nf-core-lint (subworkflows/filter_blacklist)
Process completed with exit code 1.
pytest (custom/bam2fastq, docker)
Process completed with exit code 1.
pytest (samtools/filteraligned, docker)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pytest (subworkflows/filter_blacklist, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (custom/bam2fastq, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (samtools/filteraligned, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
logs-docker- Expired
268 MB