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Prepare to release v3.0.3 #87

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merged 4 commits into from
Jul 11, 2024
Merged

Prepare to release v3.0.3 #87

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2e63722
chore: update version for 3.0.3
kelly-sovacool Jul 11, 2024
ef9a37d
chore: update CHANGELOG to add back missing PR descriptions
kelly-sovacool Jul 11, 2024
7494238
chore: better description for PR #86
kelly-sovacool Jul 11, 2024
a65daa2
chore: fix typo
kelly-sovacool Jul 11, 2024
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21 changes: 14 additions & 7 deletions CHANGELOG.md
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@@ -1,23 +1,30 @@
## development version
## XAVIER 3.0.3

- Create `CITATION.cff` to describe how to cite XAVIER. (#68, @kelly-sovacool)
- Provide a more helpful error message when `xavier` is called with no arguments. (#75, @kelly-sovacool)
- Minor documentation improvements. (#78, @kelly-sovacool)
- Bug fixes:
- Use `--rerun--incomplete` Snakemake argument and fix bed. (#66, @dnousome)
- Fix final somatic merge (#70, @dnousome)
- Fix Varscan/Mutect2 output to keep Tumor Normal ordering. (#84, @dnousome)
- Reduce memory allocation. (#86, @samarth8392)
- Provide a more helpful error message when `xavier` is called with no arguments. (#75, @kelly-sovacool)
- Documentation improvements: (#78, @kelly-sovacool)
- Document the release process for developers. (#63, @kelly-sovacool)
- Create `CITATION.cff` to describe how to cite XAVIER. (#68, @kelly-sovacool)
- Sync GitHub Actions with other CCBR pipelines. (#65, #67, @kelly-sovacool; #73, @kopardev)

## v3.0.2
## XAVIER 3.0.2

- Documentation updates for GUI and other genome references
- Additional IUPAC changes to play nice with GATK tools (non ACGTN codes convert to N)

## v3.0.1
## XAVIER 3.0.1

Hotfixes for all!

- Increased memory for somatic merge rule
- Fixed spooker/runner calls for run info
- Fixed vcf2maf which missed the Intersection of calls

## v3.0.0
## XAVIER 3.0.0

- added [FRCE](https://ncifrederick.cancer.gov/staff/frce/welcome) support.
- adding `$triggeroptions` to _snakemake_ cli.
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4 changes: 2 additions & 2 deletions CITATION.cff
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Expand Up @@ -32,5 +32,5 @@ url: https://ccbr.github.io/XAVIER/
repository-code: https://github.com/CCBR/XAVIER
license: MIT
type: software
version: 3.0.2
date-released: 2023-12-19
version: 3.0.3
date-released: 2024-07-11
4 changes: 2 additions & 2 deletions src/__init__.py
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Expand Up @@ -7,5 +7,5 @@
# across python2 and python3.
sys.path.append(os.path.dirname(os.path.realpath(__file__)))

# Ground source of truth for version information
version = "v3.0.2-dev"
# Single source for version information
version = "3.0.3"
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