Merge pull request #87 from CCBR/rel-v3.0.3

Prepare to release v3.0.3

CHANGELOG.md

@@ -1,23 +1,30 @@
-## development version
+## XAVIER 3.0.3
 
-- Create `CITATION.cff` to describe how to cite XAVIER. (#68, @kelly-sovacool)
-- Provide a more helpful error message when `xavier` is called with no arguments. (#75, @kelly-sovacool)
-- Minor documentation improvements. (#78, @kelly-sovacool)
+- Bug fixes:
+  - Use `--rerun--incomplete` Snakemake argument and fix bed. (#66, @dnousome)
+  - Fix final somatic merge (#70, @dnousome)
+  - Fix Varscan/Mutect2 output to keep Tumor Normal ordering. (#84, @dnousome)
+  - Reduce memory allocation. (#86, @samarth8392)
+  - Provide a more helpful error message when `xavier` is called with no arguments. (#75, @kelly-sovacool)
+- Documentation improvements: (#78, @kelly-sovacool)
+  - Document the release process for developers. (#63, @kelly-sovacool)
+  - Create `CITATION.cff` to describe how to cite XAVIER. (#68, @kelly-sovacool)
+- Sync GitHub Actions with other CCBR pipelines. (#65, #67, @kelly-sovacool; #73, @kopardev)
 
-## v3.0.2
+## XAVIER 3.0.2
 
 - Documentation updates for GUI and other genome references
 - Additional IUPAC changes to play nice with GATK tools (non ACGTN codes convert to N)
 
-## v3.0.1
+## XAVIER 3.0.1
 
 Hotfixes for all!
 
 - Increased memory for somatic merge rule
 - Fixed spooker/runner calls for run info
 - Fixed vcf2maf which missed the Intersection of calls
 
-## v3.0.0
+## XAVIER 3.0.0
 
 - added [FRCE](https://ncifrederick.cancer.gov/staff/frce/welcome) support.
 - adding `$triggeroptions` to _snakemake_ cli.

CITATION.cff

@@ -32,5 +32,5 @@ url: https://ccbr.github.io/XAVIER/
 repository-code: https://github.com/CCBR/XAVIER
 license: MIT
 type: software
-version: 3.0.2
-date-released: 2023-12-19
+version: 3.0.3
+date-released: 2024-07-11

src/__init__.py

@@ -7,5 +7,5 @@
 # across python2 and python3.
 sys.path.append(os.path.dirname(os.path.realpath(__file__)))
 
-# Ground source of truth for version information
-version = "v3.0.2-dev"
+# Single source for version information
+version = "3.0.3"