fix: removed ifelse from targets; def targs comes from config

CCBR · Aug 16, 2024 · 2c354df · 2c354df
1 parent 0e06b20
commit 2c354df
Showing 1 changed file with 1 addition and 5 deletions.
diff --git a/src/xavier/gui.py b/src/xavier/gui.py
@@ -283,11 +283,7 @@ def launch_gui(DEBUG=True):
                 genome=genome,
                 targets=values["-TARGETS-"]
                 if values["-TARGETS-"]
-                else (
-                    xavier_base("resources", "Agilent_SSv7_allExons_hg38.bed")
-                    if genome == "hg38"
-                    else(xavier_base("resources", "SureSelect_mm10_sorted.bed"))
-                ),  # TODO should this be part of the genome config file?
+                else (""),  # TODO should this be part of the genome config file?
                 mode="slurm",
                 job_name="pl:xavier",
                 callers=["mutect2", "mutect", "strelka", "vardict", "varscan"],