Deployed 87bd96e to ref with MkDocs 1.5.3 and mike 2.0.0

CBroz1 · Mar 7, 2024 · e6bfc4d · e6bfc4d
1 parent 709a971
commit e6bfc4d
Show file tree

Hide file tree

Showing 139 changed files with 11,204 additions and 9,587 deletions.
diff --git a/ref/404.html b/ref/404.html
@@ -16,15 +16,15 @@
 
 
       <link rel="icon" href="/spyglass/latest/images/Spyglass.svg">
-      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.9">
+      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.13">
 
 
 
         <title>Spyglass</title>
 
 
 
-      <link rel="stylesheet" href="/spyglass/latest/assets/stylesheets/main.f2e4d321.min.css">
+      <link rel="stylesheet" href="/spyglass/latest/assets/stylesheets/main.7e359304.min.css">
 
 
         <link rel="stylesheet" href="/spyglass/latest/assets/stylesheets/palette.06af60db.min.css">
@@ -948,7 +948,7 @@
 
 
     <li class="md-nav__item">
-      <a href="/spyglass/latest/notebooks/51_MUA_Detection.ipynb" class="md-nav__link">
+      <a href="/spyglass/latest/notebooks/50_MUA_Detection/" class="md-nav__link">
 
 
   <span class="md-ellipsis">
@@ -4601,7 +4601,7 @@ <h1>404 - Not found</h1>
     <script id="__config" type="application/json">{"base": "/spyglass/latest", "features": ["toc.follow", "navigation.top", "navigation.instant", "navigation.tracking", "navigation.top", "search.suggest", "search.share", "navigation.footer", "content.code.copy"], "search": "/spyglass/latest/assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="/spyglass/latest/assets/javascripts/bundle.8fd75fb4.min.js"></script>
+      <script src="/spyglass/latest/assets/javascripts/bundle.c8d2eff1.min.js"></script>
 
 
   </body>

diff --git a/ref/CHANGELOG/index.html b/ref/CHANGELOG/index.html
@@ -22,15 +22,15 @@
 
 
       <link rel="icon" href="../images/Spyglass.svg">
-      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.9">
+      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.13">
 
 
 
         <title>Change Log - Spyglass</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.f2e4d321.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.7e359304.min.css">
 
 
         <link rel="stylesheet" href="../assets/stylesheets/palette.06af60db.min.css">
@@ -959,7 +959,7 @@
 
 
     <li class="md-nav__item">
-      <a href="../notebooks/51_MUA_Detection.ipynb" class="md-nav__link">
+      <a href="../notebooks/50_MUA_Detection/" class="md-nav__link">
 
 
   <span class="md-ellipsis">
@@ -4525,6 +4525,39 @@
     </label>
     <ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
 
+        <li class="md-nav__item">
+  <a href="#051-march-7-2024" class="md-nav__link">
+    <span class="md-ellipsis">
+      [0.5.1] (March 7, 2024)
+    </span>
+  </a>
+
+    <nav class="md-nav" aria-label="[0.5.1] (March 7, 2024)">
+      <ul class="md-nav__list">
+
+          <li class="md-nav__item">
+  <a href="#infrastructure" class="md-nav__link">
+    <span class="md-ellipsis">
+      Infrastructure
+    </span>
+  </a>
+
+</li>
+
+          <li class="md-nav__item">
+  <a href="#pipelines" class="md-nav__link">
+    <span class="md-ellipsis">
+      Pipelines
+    </span>
+  </a>
+
+</li>
+
+      </ul>
+    </nav>
+
+</li>
+
         <li class="md-nav__item">
   <a href="#050-february-9-2024" class="md-nav__link">
     <span class="md-ellipsis">
@@ -4536,7 +4569,7 @@
       <ul class="md-nav__list">
 
           <li class="md-nav__item">
-  <a href="#infrastructure" class="md-nav__link">
+  <a href="#infrastructure_1" class="md-nav__link">
     <span class="md-ellipsis">
       Infrastructure
     </span>
@@ -4545,7 +4578,7 @@
 </li>
 
           <li class="md-nav__item">
-  <a href="#pipelines" class="md-nav__link">
+  <a href="#pipelines_1" class="md-nav__link">
     <span class="md-ellipsis">
       Pipelines
     </span>
@@ -4587,7 +4620,7 @@
 </li>
 
           <li class="md-nav__item">
-  <a href="#pipelines_1" class="md-nav__link">
+  <a href="#pipelines_2" class="md-nav__link">
     <span class="md-ellipsis">
       Pipelines
     </span>
@@ -4717,6 +4750,39 @@
     </label>
     <ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
 
+        <li class="md-nav__item">
+  <a href="#051-march-7-2024" class="md-nav__link">
+    <span class="md-ellipsis">
+      [0.5.1] (March 7, 2024)
+    </span>
+  </a>
+
+    <nav class="md-nav" aria-label="[0.5.1] (March 7, 2024)">
+      <ul class="md-nav__list">
+
+          <li class="md-nav__item">
+  <a href="#infrastructure" class="md-nav__link">
+    <span class="md-ellipsis">
+      Infrastructure
+    </span>
+  </a>
+
+</li>
+
+          <li class="md-nav__item">
+  <a href="#pipelines" class="md-nav__link">
+    <span class="md-ellipsis">
+      Pipelines
+    </span>
+  </a>
+
+</li>
+
+      </ul>
+    </nav>
+
+</li>
+
         <li class="md-nav__item">
   <a href="#050-february-9-2024" class="md-nav__link">
     <span class="md-ellipsis">
@@ -4728,7 +4794,7 @@
       <ul class="md-nav__list">
 
           <li class="md-nav__item">
-  <a href="#infrastructure" class="md-nav__link">
+  <a href="#infrastructure_1" class="md-nav__link">
     <span class="md-ellipsis">
       Infrastructure
     </span>
@@ -4737,7 +4803,7 @@
 </li>
 
           <li class="md-nav__item">
-  <a href="#pipelines" class="md-nav__link">
+  <a href="#pipelines_1" class="md-nav__link">
     <span class="md-ellipsis">
       Pipelines
     </span>
@@ -4779,7 +4845,7 @@
 </li>
 
           <li class="md-nav__item">
-  <a href="#pipelines_1" class="md-nav__link">
+  <a href="#pipelines_2" class="md-nav__link">
     <span class="md-ellipsis">
       Pipelines
     </span>
@@ -4874,9 +4940,36 @@
 
 
 <h1 id="change-log">Change Log<a class="headerlink" href="#change-log" title="Permanent link">&para;</a></h1>
-<h2 id="050-february-9-2024"><a href="https://github.com/LorenFrankLab/spyglass/releases/tag/0.5.0">0.5.0</a> (February 9, 2024)<a class="headerlink" href="#050-february-9-2024" title="Permanent link">&para;</a></h2>
+<h2 id="051-march-7-2024">[0.5.1] (March 7, 2024)<a class="headerlink" href="#051-march-7-2024" title="Permanent link">&para;</a></h2>
 <h3 id="infrastructure">Infrastructure<a class="headerlink" href="#infrastructure" title="Permanent link">&para;</a></h3>
 <ul>
+<li>Add user roles to <code>database_settings.py</code>. #832</li>
+<li>Fix redundancy in <code>waveforms_dir</code> #857</li>
+<li>Revise <code>dj_chains</code> to permit undirected paths for paths with multiple Merge
+    Tables. #846</li>
+</ul>
+<h3 id="pipelines">Pipelines<a class="headerlink" href="#pipelines" title="Permanent link">&para;</a></h3>
+<ul>
+<li>Position:<ul>
+<li>Fixes to <code>environment-dlc.yml</code> restricting tensortflow #834</li>
+<li>Video restriction for multicamera epochs #834</li>
+<li>Fixes to <code>_convert_mp4</code> #834</li>
+<li>Replace deprecated calls to <code>yaml.safe_load()</code> #834</li>
+</ul>
+</li>
+<li>Spikesorting:<ul>
+<li>Increase<code>spikeinterface</code> version to &gt;=0.99.1, &lt;0.100 #852</li>
+<li>Bug fix in single artifact interval edge case #859</li>
+</ul>
+</li>
+<li>LFP<ul>
+<li>In LFPArtifactDetection, only apply referencing if explicitly selected #863</li>
+</ul>
+</li>
+</ul>
+<h2 id="050-february-9-2024"><a href="https://github.com/LorenFrankLab/spyglass/releases/tag/0.5.0">0.5.0</a> (February 9, 2024)<a class="headerlink" href="#050-february-9-2024" title="Permanent link">&para;</a></h2>
+<h3 id="infrastructure_1">Infrastructure<a class="headerlink" href="#infrastructure_1" title="Permanent link">&para;</a></h3>
+<ul>
 <li>Docs:<ul>
 <li>Additional documentation. #690</li>
 <li>Add overview of Spyglass to docs. #779</li>
@@ -4915,7 +5008,7 @@ <h3 id="infrastructure">Infrastructure<a class="headerlink" href="#infrastructur
 </ul>
 </li>
 </ul>
-<h3 id="pipelines">Pipelines<a class="headerlink" href="#pipelines" title="Permanent link">&para;</a></h3>
+<h3 id="pipelines_1">Pipelines<a class="headerlink" href="#pipelines_1" title="Permanent link">&para;</a></h3>
 <ul>
 <li>Common:<ul>
 <li><code>IntervalList</code>: Add secondary key <code>pipeline</code> #742</li>
@@ -4983,7 +5076,7 @@ <h3 id="infrastructure-support">Infrastructure / Support<a class="headerlink" hr
 <li>Centralized config/path handling to permit setting via datajoint config. #593</li>
 <li>Fixed Merge Table deletes: error specificity and transaction context. #617</li>
 </ul>
-<h3 id="pipelines_1">Pipelines<a class="headerlink" href="#pipelines_1" title="Permanent link">&para;</a></h3>
+<h3 id="pipelines_2">Pipelines<a class="headerlink" href="#pipelines_2" title="Permanent link">&para;</a></h3>
 <ul>
 <li>Common:<ul>
 <li>Added support multiple cameras per epoch. #557</li>
@@ -5185,7 +5278,7 @@ <h2 id="030-march-24-2023"><a href="https://github.com/LorenFrankLab/spyglass/re
     <script id="__config" type="application/json">{"base": "..", "features": ["toc.follow", "navigation.top", "navigation.instant", "navigation.tracking", "navigation.top", "search.suggest", "search.share", "navigation.footer", "content.code.copy"], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.8fd75fb4.min.js"></script>
+      <script src="../assets/javascripts/bundle.c8d2eff1.min.js"></script>
 
 
   </body>

diff --git a/ref/LICENSE/index.html b/ref/LICENSE/index.html
@@ -20,15 +20,15 @@
 
 
       <link rel="icon" href="../images/Spyglass.svg">
-      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.9">
+      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.13">
 
 
 
         <title>Copyright - Spyglass</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.f2e4d321.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.7e359304.min.css">
 
 
         <link rel="stylesheet" href="../assets/stylesheets/palette.06af60db.min.css">
@@ -952,7 +952,7 @@
 
 
     <li class="md-nav__item">
-      <a href="../notebooks/51_MUA_Detection.ipynb" class="md-nav__link">
+      <a href="../notebooks/50_MUA_Detection/" class="md-nav__link">
 
 
   <span class="md-ellipsis">
@@ -4669,7 +4669,7 @@ <h1>Copyright</h1>
     <script id="__config" type="application/json">{"base": "..", "features": ["toc.follow", "navigation.top", "navigation.instant", "navigation.tracking", "navigation.top", "search.suggest", "search.share", "navigation.footer", "content.code.copy"], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.8fd75fb4.min.js"></script>
+      <script src="../assets/javascripts/bundle.c8d2eff1.min.js"></script>
 
 
   </body>

diff --git a/ref/api/cli/cli/index.html b/ref/api/cli/cli/index.html
@@ -22,15 +22,15 @@
 
 
       <link rel="icon" href="../../../images/Spyglass.svg">
-      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.9">
+      <meta name="generator" content="mkdocs-1.5.3, mkdocs-material-9.5.13">
 
 
 
         <title>cli.py - Spyglass</title>
 
 
 
-      <link rel="stylesheet" href="../../../assets/stylesheets/main.f2e4d321.min.css">
+      <link rel="stylesheet" href="../../../assets/stylesheets/main.7e359304.min.css">
 
 
         <link rel="stylesheet" href="../../../assets/stylesheets/palette.06af60db.min.css">
@@ -959,7 +959,7 @@
 
 
     <li class="md-nav__item">
-      <a href="../../../notebooks/51_MUA_Detection.ipynb" class="md-nav__link">
+      <a href="../../../notebooks/50_MUA_Detection/" class="md-nav__link">
 
 
   <span class="md-ellipsis">
@@ -4752,7 +4752,7 @@ <h1>cli.py</h1>
     <script id="__config" type="application/json">{"base": "../../..", "features": ["toc.follow", "navigation.top", "navigation.instant", "navigation.tracking", "navigation.top", "search.suggest", "search.share", "navigation.footer", "content.code.copy"], "search": "../../../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../../../assets/javascripts/bundle.8fd75fb4.min.js"></script>
+      <script src="../../../assets/javascripts/bundle.c8d2eff1.min.js"></script>
 
 
   </body>