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Merge branch '613' of https://github.com/cbroz1/spyglass
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CBroz1 committed Aug 23, 2023
2 parents 34134db + 0b81a78 commit cc48025
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Showing 15 changed files with 383 additions and 152 deletions.
12 changes: 7 additions & 5 deletions environment_position.yml
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# FIRST: INSTALL CORRECT DRIVER for GPU, see https://stackoverflow.com/questions/30820513/what-is-the-correct-version-of-cuda-for-my-nvidia-driver/30820690
#
# NOTE: Perform install on a GPU-equipped machine
#
# install: mamba env create -f environment_position.yml
# update: mamba env update -f environment_position.yml
# after installing do the following:
# conda activate spyglass-position
# mamba env config vars set LD_LIBRARY_PATH=~/path/to/anaconda3/envs/spyglass-position/lib/
# run mamba install -c conda-forge wxpython
# cd into spyglass and run pip install -e .[position]
# run: conda activate spyglass-position
# run: mamba env config vars set LD_LIBRARY_PATH=~/path/to/<anaconda3 or mambaforge>/envs/spyglass-position/lib/
# run: mamba install -c conda-forge wxpython
# cd into spyglass and run: pip install -e .[position]

name: spyglass-position
channels:
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- pip:
- pubnub<6.4.0
- mountainsort4
- spikeinterface>0.94,<0.98
- spikeinterface>=0.98.2,<0.99
- pynwb>=2.2.0,<3
- hdmf>=3.4.6
- datajoint>=0.13.6
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2 changes: 2 additions & 0 deletions src/spyglass/common/__init__.py
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RawPosition,
StateScriptFile,
VideoFile,
PositionIntervalMap,
convert_epoch_interval_name_to_position_interval_name,
)
from .common_device import (
CameraDevice,
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