Add arguments for benchcab clean

benchcab/benchcab.py

@@ -227,7 +227,11 @@ def checkout(self, config_path: str):
         rev_number_log = ""
 
         for model in self._get_models(config):
-            model.repo.checkout()
+            try:
+                model.repo.checkout()
+            except Exception:
+                self.logger.error("Try using `benchcab clean realisations` first")
+                sys.exit(1)
             rev_number_log += f"{model.name}: {model.repo.get_revision()}\n"
 
         rev_number_log_path = next_path("rev_number-*.log")
@@ -317,10 +321,12 @@ def fluxsite(self, config_path: str, no_submit: bool, skip: list[str]):
         else:
             self.fluxsite_submit_job(config_path, skip)
 
-    def clean(self, config_path: str):
-        """Endpoint for cleaning runs uirectory ig."""
-        clean_realisation_files()
-        clean_submission_files()
+    def clean(self, config_path: str, clean_option: str):
+        """Endpoint for `benchcab clean`."""
+        if clean_option in ["all", "realisations"]:
+            clean_realisation_files()
+        if clean_option in ["all", "submissions"]:
+            clean_submission_files()
 
     def spatial_setup_work_directory(self, config_path: str):
         """Endpoint for `benchcab spatial-setup-work-dir`."""

benchcab/cli.py

@@ -225,14 +225,19 @@ def generate_parser(app: Benchcab) -> argparse.ArgumentParser:
     parser_spatial_run_tasks.set_defaults(func=app.spatial_run_tasks)
 
     # subcommand: 'benchcab clean'
-    parser_spatial = subparsers.add_parser(
+    parser_clean = subparsers.add_parser(
         "clean",
         parents=[args_help, args_subcommand],
         help="Cleanup files created by running benchcab.",
         description="""Removes src/ and runs/ directories, along with log files in the 
-        project root directory.""",
+        project root directory. The user has to specify which stage of files to remove 
+        via \{all, realisations, submissions\} subcommand""",
         add_help=False,
     )
 
-    parser_spatial.set_defaults(func=app.clean)
+    parser_clean.add_argument(
+        "clean_option", choices=["all", "realisations", "submissions"]
+    )
+
+    parser_clean.set_defaults(func=app.clean)
     return main_parser

benchcab/utils/repo.py

@@ -50,13 +50,16 @@ class LocalRepo(Repo):
     """Concrete implementation of the `Repo` class using local path backend."""
 
     def __init__(self, local_path: str, path: str) -> None:
-        """Return a LocalRepo instance.
+        """_summary_.
 
         Parameters
         ----------
+        local_path : str
+            Path for local checkout of CABLE
         path : str
-            Path of local CABLE branch
-        """        
+            Directory where CABLE is symlinked
+
+        """
         self.name = Path(local_path).name
         self.local_path = local_path
         self.path = path / self.name if path.is_dir() else path
@@ -89,6 +92,7 @@ def get_branch_name(self) -> str:
         """
         return Path(self.path).absolute()
 
+
 class GitRepo(Repo):
     """A concrete implementation of the `Repo` class using a Git backend.