v3.0.1

Bug Fixes

• Fixed a bug causing some iterables (e.g., tuples) in queries not to work as expected

Improvements

• Made morphology directory available via MorphHelper.get_morphology_dir

Version v3.0.0

New Features

• Added simulation config validation
• Added a new commandline subcommands: validate-simulation, validate-circuit

Breaking Changes

• Edge populations' iter_connections returns CircuitNodeId instead of int
• Removed the commandline subcommand validate in favor of new validate-circuit command

v2.0.2

Improvements

• Readded compatibility with jsonschema<4.18

v2.0.1

Bug Fixes

• fixed pylint cyclic-import issues
• fixed docstrings of Nodes.get, Edges.get
• did small fixes and added basic testing to _plotting.py

v2.0.0

New Features

• NodeSets object can be instantiated with three methods: from_file, from_string, from_dict
• Simulation inputs are now accessible with Simulation.inputs
• libsonata reader of synapse_replay files can now be accessed with simulation.inputs["<input_name>"].reader
  • only h5 format is supported

Improvements

• Node set resolution is done by libsonata
• Simulation node set extends Circuit node set
  • A warning is raised if any of the circuit's node sets is overwritten
• Added kwarg: raise_missing_property to NodePopulation.get
• Undeprecated calling Edges.get and EdgePopulation.get with properties=None

Bug Fixes

• Fixed the Same property with different dtype issue with nodes.get, edges.get

Breaking Changes

• nodes.get and edges.get (and network.get) no longer return a dataframe
  • returns a generator yielding tuples of (<population_name>, <dataframe>) instead
  • to get the previous behavior (all in one dataframe): pd.concat(df for _, df in circuit.nodes.get(*args, **kwargs))
• Removed Network.property_dtypes, CircuitIds.index_schema
• Circuit.node_sets, Simulation.node_sets returns NodeSets object initialized with empty dict when node sets file is not present
• NodeSet.resolved is no longer available
• FrameReport.node_set returns node_set name instead of resolved node set query
• Removed Edges.properties, EdgePopulation.properties that were already supposed to be removed in v1.0.0

v1.0.7

New Features

• Added CircuitIds.intersection to take the intersection of two CircuitIds.

Improvements

• Improve performance when querying a population with get() and ids().

Bug Fixes

• Fix CircuitIds.sample() to always return different samples.
• Ensure that the report DataFrames have the same schema even when empty.

v1.0.6

Improvements

• Clarification for partial circuit configs
• Publish version as bluepysnap.__version__
• Support lazy loading of nodes attributes.
• Add t_step parameter to frame reports.
• Add python 3.11 tests.
• Drop python 3.7 support.

v1.0.5

Improvements

• Add python 3.10 tests, and update GitHub actions.
• Add pickling to classes with caching, to reduce chances of blowup on cached methods

v1.0.4

Bug Fixes

• Remove NeuroM and lazy-object-proxy dependency leftovers.

v1.0.3

Improvements

• schemas can return datatypes for attributes for the nodes and edges