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[BBPBGLIB-1030] Reject *.sonata nodes and edges file #19

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merged 8 commits into from
Aug 9, 2023

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@WeinaJi WeinaJi commented Aug 7, 2023

Early in development there was some circuit data using .sonata file extension but then later we decided to use .h5 files. Currently we still have some old circuits produced with .sonata file extension. Reading wrong edge file extension (such as .sonata) could lead to a problem for registering source and destination populations of connectivity. This is because that neurodamus reads the src and dst population from the meta data ONLY for ".h5" edge files.

Scope
Reject *.sonata edges files, as well as nodes files. They are the same as .h5 files and should be renamed.

Testing
Existing unit tests and blueconfigs CI test

Change-Id: If79d49a6adc370f90cd28a77f95e16abb9e4607e
Change-Id: I3a7acface7221f807cd8f2bacd3efd561eb73969
Change-Id: I8b49f48163edc2845f047cffe899b7ce1f1bfe44
Change-Id: I790ae63418688ce159486785f104006251b026d3
Change-Id: I8bf816717bfd7b89fee76579c9e58c16aa944e40
BLUECONFIGS_BRANCH=weji/sonata_files

Change-Id: I150dcfec44da80671b083611f062fd7dfc5bd45c
@WeinaJi WeinaJi force-pushed the weji/reject_sonata_extension branch from 702c82d to 812b43c Compare August 7, 2023 09:07
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Logfiles from GitLab pipeline #142678 (:white_check_mark:) have been uploaded here!

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@WeinaJi WeinaJi marked this pull request as ready for review August 8, 2023 12:21
@WeinaJi WeinaJi requested review from ferdonline and jorblancoa and removed request for ferdonline August 8, 2023 12:21
@WeinaJi WeinaJi merged commit 3703824 into main Aug 9, 2023
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@WeinaJi WeinaJi deleted the weji/reject_sonata_extension branch August 9, 2023 08:49
WeinaJi added a commit that referenced this pull request Oct 14, 2024
Early in development some circuits were produced with .sonata file
extension but later we decided to use .h5 extension. Currently we still
have some old circuits produced with .sonata file extension. Reading
wrong edge file extension (such as .sonata) could lead to a problem for
registering source and destination populations of connectivity. This is
because that neurodamus reads the src and dst population from the meta
data ONLY for ".h5" edge files.

Scope
Reject *.sonata edges files, as well as nodes files. They are the same
as .h5 files and should be renamed.

Testing
Existing unit tests and blueconfigs CI test
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4 participants