Implement XTensor support in core. #1233
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| name: HighFive_CI | |
| concurrency: | |
| group: ${{ github.workflow }}#${{ github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - v2.x | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| - v2.x | |
| paths-ignore: | |
| - '**.md' | |
| - '**.rst' | |
| - 'doc/**' | |
| env: | |
| HOMEBREW_NO_AUTO_UPDATE: 1 # for reproducibility, dont autoupdate | |
| BUILD_TYPE: RelWithDebInfo | |
| INSTALL_DIR: install | |
| jobs: | |
| # Job testing compiling on several Ubuntu systems + MPI | |
| # ========================================================= | |
| # | |
| # For 20.04: bare and activate Boost, OpenCV | |
| # For latest: activate Boost, Eigen, OpenCV, with Ninja | |
| # | |
| # XTensor tests are run for conda/mamba and MacOS | |
| Linux_MPI: | |
| runs-on: ${{matrix.config.os}} | |
| name: Linux_MPI (${{toJson(matrix.config)}}) | |
| strategy: | |
| matrix: | |
| include: | |
| - config: | |
| os: ubuntu-20.04 | |
| pkgs: '' | |
| - config: | |
| os: ubuntu-20.04 | |
| pkgs: 'libboost-all-dev libopencv-dev' | |
| flags: '-DHIGHFIVE_TEST_BOOST:Bool=ON -DHIGHFIVE_TEST_OPENCV:Bool=ON -GNinja' | |
| - config: | |
| os: ubuntu-latest | |
| pkgs: 'libboost-all-dev libeigen3-dev libopencv-dev' | |
| flags: '-DHIGHFIVE_TEST_BOOST:Bool=ON -DHIGHFIVE_TEST_EIGEN:Bool=ON -DHIGHFIVE_TEST_OPENCV:Bool=ON -GNinja' | |
| - config: | |
| os: ubuntu-20.04 | |
| pkgs: 'libboost-all-dev' | |
| flags: '-DCMAKE_CXX_STANDARD=17 -DHIGHFIVE_TEST_BOOST:Bool=ON' | |
| - config: | |
| os: ubuntu-22.04 | |
| flags: '-DHIGHFIVE_TEST_BOOST=Off -DCMAKE_CXX_STANDARD=20 -DHIGHFIVE_HAS_CONCEPTS=On' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: "Setup MPI" | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: openmpi | |
| - name: "Install libraries" | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get -qq install libhdf5-openmpi-dev libsz2 ninja-build ${{ matrix.config.pkgs }} | |
| - name: Build | |
| run: | | |
| CMAKE_OPTIONS=(-DHDF5_PREFER_PARALLEL:BOOL=ON ${{ matrix.config.flags }}) | |
| source $GITHUB_WORKSPACE/.github/build.sh | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ctest -j2 --output-on-failure -C $BUILD_TYPE | |
| - name: Test No HDF5 Diagnositics | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ! ctest --verbose -C $BUILD_TYPE | grep HDF5-DIAG | |
| # Job testing several versions of hdf5 | |
| # =================================================== | |
| Linux_HDF5_Versions: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5_version : [ hdf5-1_8_23, hdf5-1_10_11, hdf5-1_12_3, hdf5_1.14.4.1 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: "Install libraries" | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get -qq install ninja-build libsz2 zlib1g-dev libboost-all-dev | |
| - name: Build HDF5 | |
| run: | | |
| wget https://github.com/HDFGroup/hdf5/archive/refs/tags/${{ matrix.hdf5_version }}.tar.gz --output-document hdf5.tar.gz | |
| tar xf hdf5.tar.gz | |
| mkdir -p hdf5-${{ matrix.hdf5_version }}/BUILD && cd hdf5-${{ matrix.hdf5_version }}/BUILD | |
| cmake .. -DCMAKE_BUILD_TYPE=Release -GNinja -DCMAKE_INSTALL_PREFIX=$HOME/${{ matrix.hdf5_version }} -DHDF5_ENABLE_Z_LIB_SUPPORT=ON -DUSE_LIBAEC=ON -DHDF5_BUILD_EXAMPLES=OFF -DBUILD_STATIC_LIBS=OFF -DBUILD_TESTING=OFF | |
| ninja && ninja install | |
| - name: Build | |
| run: | | |
| CMAKE_OPTIONS=( | |
| -GNinja | |
| -DHDF5_ROOT=$HOME/${{ matrix.hdf5_version }} | |
| ) | |
| source $GITHUB_WORKSPACE/.github/build.sh | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ctest -j2 --output-on-failure -C $BUILD_TYPE | |
| - name: Test No HDF5 Diagnositics | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ! ctest --verbose -C $BUILD_TYPE | grep HDF5-DIAG | |
| - name: Examples | |
| working-directory: ${{github.workspace}}/build/src/examples | |
| run: $GITHUB_WORKSPACE/.github/run_examples.sh | |
| # Job testing several compilers on a stable Linux | |
| # ==================================================== | |
| Linux_Compilers: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| env: [ | |
| {CC: clang-10, CXX: clang++-10}, | |
| {CC: clang-12, CXX: clang++-12}, | |
| {CC: gcc-9, CXX: g++-9}, | |
| {CC: gcc-10, CXX: g++-10}, | |
| ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: "Install libraries" | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get -qq install libboost-all-dev libhdf5-dev libsz2 ninja-build | |
| - name: Build | |
| env: ${{matrix.env}} | |
| run: | | |
| CMAKE_OPTIONS=(-DHIGHFIVE_TEST_BOOST=ON -GNinja) | |
| source $GITHUB_WORKSPACE/.github/build.sh | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ctest -j2 --output-on-failure -C $BUILD_TYPE | |
| - name: Test No HDF5 Diagnositics | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ! ctest --verbose -C $BUILD_TYPE | grep HDF5-DIAG | |
| - name: Examples | |
| working-directory: ${{github.workspace}}/build/src/examples | |
| run: $GITHUB_WORKSPACE/.github/run_examples.sh | |
| # Job running unit-test with sanitizers | |
| # ===================================== | |
| Linux_Sanitizers: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| env: [ | |
| {CC: clang-12, CXX: clang++-12, HIGHFIVE_SANITIZER: address}, | |
| {CC: clang-12, CXX: clang++-12, HIGHFIVE_SANITIZER: undefined}, | |
| {CC: gcc-10, CXX: g++-10, HIGHFIVE_GLIBCXX_ASSERTIONS: On}, | |
| ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: "Install libraries" | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get -qq install libboost-all-dev libeigen3-dev libhdf5-dev libsz2 ninja-build | |
| - name: Build | |
| env: ${{matrix.env}} | |
| run: | | |
| CMAKE_OPTIONS=( | |
| -GNinja | |
| -DHIGHFIVE_TEST_BOOST:BOOL=ON | |
| -DHIGHFIVE_TEST_EIGEN:BOOL=ON | |
| -DHIGHFIVE_BUILD_DOCS:BOOL=FALSE | |
| -DHIGHFIVE_GLIBCXX_ASSERTIONS=${HIGHFIVE_GLIBCXX_ASSERTIONS:-OFF} | |
| -DHIGHFIVE_SANITIZER=${HIGHFIVE_SANITIZER:-OFF} | |
| ) | |
| source $GITHUB_WORKSPACE/.github/build.sh | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ctest -j2 --output-on-failure -C $BUILD_TYPE | |
| - name: Test No HDF5 Diagnositics | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ! ctest --verbose -C $BUILD_TYPE | grep HDF5-DIAG | |
| - name: Examples | |
| working-directory: ${{github.workspace}}/build/src/examples | |
| run: $GITHUB_WORKSPACE/.github/run_examples.sh | |
| # Job to check using HighFive from other CMake projects | |
| # ===================================================== | |
| CMake_Project: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| parallelism: [ serial, parallel ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: "Update Ubuntu" | |
| run: | | |
| sudo apt-get -qq update | |
| - name: "Install common libraries" | |
| run: | | |
| sudo apt-get -qq install libboost-all-dev libsz2 ninja-build | |
| - name: "Install serial HDF5" | |
| if: matrix.parallelism == 'serial' | |
| run: | | |
| sudo apt-get -qq install libhdf5-dev | |
| - name: "Install parallel HDF5" | |
| if: matrix.parallelism == 'parallel' | |
| run: | | |
| sudo apt-get -qq install libhdf5-openmpi-dev | |
| - name: "CMake Project Integration" | |
| run: bash tests/cmake_integration/test_cmake_integration.sh | |
| # Job checking the benchmarks work | |
| # ================================ | |
| Benchmarks: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: "Install libraries" | |
| run: | | |
| sudo apt -y update | |
| sudo apt -y install --no-install-recommends libhdf5-dev pkg-config | |
| - name: "Build benchmarks" | |
| working-directory: ${{github.workspace}}/src/benchmarks | |
| run: make | |
| - run: time ${{github.workspace}}/src/benchmarks/highfive_bench | |
| # Job testing in OSX | |
| # ================== | |
| OSX: | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ "macOS-14" ] | |
| cxxstd: ["14", "17", "20"] | |
| include: | |
| - os: "macOS-12" | |
| cxxstd: "14" | |
| - os: "macOS-13" | |
| cxxstd: "20" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: "Install libraries (OSX)" | |
| run: brew install boost eigen hdf5 ninja xtensor | |
| - name: Build | |
| run: | | |
| CMAKE_OPTIONS=( | |
| -GNinja | |
| -DHIGHFIVE_TEST_BOOST:BOOL=ON | |
| -DHIGHFIVE_TEST_EIGEN:BOOL=ON | |
| -DHIGHFIVE_TEST_XTENSOR:BOOL=ON | |
| -DHIGHFIVE_BUILD_DOCS:BOOL=FALSE | |
| -DCMAKE_CXX_STANDARD=${{matrix.cxxstd}} | |
| ) | |
| source $GITHUB_WORKSPACE/.github/build.sh | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ctest -j2 --output-on-failure -C $BUILD_TYPE | |
| - name: Test No HDF5 Diagnositics | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| ! ctest --verbose -C $BUILD_TYPE | grep HDF5-DIAG | |
| - name: Examples | |
| working-directory: ${{github.workspace}}/build/src/examples | |
| run: $GITHUB_WORKSPACE/.github/run_examples.sh | |
| # Job testing in Windows | |
| # ====================== | |
| Windows: | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ "windows-2019", "windows-2022"] | |
| cxxstd: ["14", "17", "20"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: doc/environment.yaml | |
| environment-name: win-test | |
| - name: Build | |
| shell: bash -l {0} | |
| run: | | |
| CMAKE_OPTIONS=( | |
| -DCMAKE_CXX_STANDARD=${{matrix.cxxstd}} | |
| -DHIGHFIVE_UNIT_TESTS=ON | |
| -DHIGHFIVE_TEST_BOOST:BOOL=ON | |
| -DHIGHFIVE_TEST_EIGEN:BOOL=ON | |
| -DHIGHFIVE_TEST_XTENSOR:BOOL=ON | |
| ) | |
| source $GITHUB_WORKSPACE/.github/build.sh | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash -l {0} | |
| run: | | |
| ctest -j2 --output-on-failure -C $BUILD_TYPE | |
| - name: Test No HDF5 Diagnositics | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash -l {0} | |
| run: | | |
| ! ctest --verbose -C $BUILD_TYPE | grep HDF5-DIAG |