Small documentation addition in response to reviewer comments

BlauGroup · Oct 25, 2024 · 95c83da · 95c83da
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Showing 3 changed files with 9 additions and 3 deletions.
diff --git a/GMC.md b/GMC.md
@@ -147,4 +147,6 @@ When running `GMC` ensure that your input file paths are correct considering the
 
 ```
 build/GMC --reaction_database=examples/GMC/end-to-end-test/rn.sqlite --initial_state_database=examples/GMC/end-to-end-test/initial_state_copy.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --energy_budget=0 --checkpoint=1
-```
+```
+
+Running this command does not generate any new files or directories but will populate the `initial_state_database` with trajectory data.
diff --git a/LGMC.md b/LGMC.md
@@ -182,4 +182,6 @@ When running LGMC ensure that your input file paths are correct considering the
 
 ```
 build/LGMC --lattice_reaction_database=examples/LGMC/CO_oxidation/rn.sqlite --initial_state_database=examples/LGMC/CO_oxidation/initial_state.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --checkpoint=1 --parameters=examples/LGMC/CO_oxidation/LGMC_params.txt
-```
+```
+
+Running this command does not generate any new files or directories but will populate the `initial_state_database` with trajectory data.
diff --git a/NPMC.md b/NPMC.md
@@ -170,4 +170,6 @@ When running `NPMC` ensure that your input file paths are correct considering th
 
 ```
 build/NPMC --nano_particle_database=examples/NPMC/np.sqlite --initial_state_database=examples/NPMC/initial_state.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --checkpoint=1
-```
+```
+
+Running this command does not generate any new files or directories but will populate the `initial_state_database` with trajectory data.