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Update test.py
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samblau authored Jan 24, 2022
1 parent c3ae24b commit b14a415
Showing 1 changed file with 11 additions and 8 deletions.
19 changes: 11 additions & 8 deletions test.py
Original file line number Diff line number Diff line change
Expand Up @@ -255,12 +255,14 @@ def li_test():
network_loader,
folder + '/reaction_tally.tex'
)
# Run `pdflatex reaction_tally.tex` to generate the tally report PDF.
# Run `pdflatex reaction_tally.tex` in `scratch/li_test` to generate
# the tally report PDF.


# The species report shows every specie in the network and their ID.
# The species report shows every specie in the network and their IDs.
species_report(network_loader, folder + '/species_report.tex')
# Run `pdflatex species_report.tex` to generate the species report PDF.
# Run `pdflatex species_report.tex` in `scratch/li_test` to generate
# the species report PDF.


# Pathfinding is a central goal of HiPRGen / GMC. See mc_analysis.py for
Expand All @@ -281,8 +283,8 @@ def li_test():
folder + '/LEDC_pathways.tex',
sort_by_frequency=False
)
# Run `pdflatex LEDC_pathways.tex` to generater the LEDC pathway
# report.
# Run `pdflatex LEDC_pathways.tex` in `scratch/li_test` to generate
# the LEDC pathway report PDF.


# The simulation replayer sweeps through all trajectories in order
Expand All @@ -296,8 +298,8 @@ def li_test():
consumption_report(simulation_replayer,
LEDC_id,
folder + '/LEDC_consumption_report.tex')
# Run `pdflatex LEDC_consumption_report.tex` to generate the LEDC
# consumption report.
# Run `pdflatex LEDC_consumption_report.tex` in `scratch/li_test`
# to generate the LEDC consumption report PDF.


# The sink report shows species which have a production to
Expand All @@ -312,7 +314,8 @@ def li_test():
# have sufficiently low-cost paths to pass the third criteria and
# thus to be considered products of the test network used here.
sink_report(simulation_replayer, folder + '/sink_report.tex')
# Run `pdflatex sink_report.tex` to generater the sink report PDF.
# Run `pdflatex sink_report.tex` in `scratch/li_test` to generate
# the sink report PDF.



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