gcb-tutorial

BiBiGrid

To start a BiBiGrid cluster in an OpenStack cloud computing environment clone the github repository to your local machine:

git clone https://github.com/BiBiServ/gcb-tutorial.git
cd gcb-tutorial

You will be devided into two groups. One group will work on the OpenStack Cloud in Bielefeld, the other group will work in Giessen.

Bielefeld Setup

Copy the template to your working directory:

cp config/.bibigrid.properties.BIELEFELD ./bibigrid.properties

Giessen Setup

Copy the template to your working directory:

cp config/.bibigrid.properties.GIESSEN ./bibigrid.properties

Add credentials to properties file

Edit the bibigrid.properties file and add your OpenStack credentials. You also need to specify the SSH key name and SSH key file in the properties file.

Edit the following lines in the properties file:

openstack-username=# OPENSTACK USERNAME
openstack-password=# OPENSTACK PASSWORD
identity-file=#PATH TO PRIVATE SSH KEY
keypair=# NAME OF KEYPAIR

Start BiBiGrid cluster

Now you can start an OpenStack Cluster. Specifying your user name during startup will make it easier to identify your cluster later:

bin/bibigrid -c -o bibigrid.properties -u USERNAME

Once the OpenStack instance is running, make sure you take note of its IP address. We will need it later!

BiBiGrid will give you the necessary information you need to login to the instance:

export BIBIGRID_MASTER=<OPENSTACK INSTANCE IP ADDRESS>

You can then log on the master node with:

ssh -i PATH_TO_YOUR_SECRET_SSH_KEY_FILE ubuntu@$BIBIGRID_MASTER