BS-91 | Merging SNOMED master to Bahmni master (#582)

* BS-39 | Siva,Vijay | Publish openmrs-module-bahmniapps with SNOMED image tags (#499) Co-authored-by: Siva Reddy <[email protected]> * BS-48 | Patrick | display a toast message if terminology server is unavailable * BS-75 | Patrick | Prefix diagnosis Coded Answer UUID with conceptSystem when available * BS-75 | Patrick | Update diagnosis Coded Answer UUID delimiter * Siva Reddy | BS-42 | Auto deployment to SNOMED Dev Environment (#534) * BS-48 | Patrick | Fix error message poput timeout * BS-48 | Patrick | Update condition to use shorthand syntax * BS-48 | Patrick | Display generic diagnosis TS error message * BS-48 | Patrick | Remove null error messages * BS-48 | Patrick | add error handler for diagnosis search * BS-48 | Patrick | update messaging key on diagnosis controller * BS-103 | Patrick | Create FHIR Bundle resource when drug name is selected * BS-102 | made changes to send only draft conditiion/diagnosis/medications and updated druglist api to include drugReferenceMaps as part of the response * BS-103 | Patrick | display CDSS alert for drug interactions when drug is selected * BS-103 | replaced arrow function with normal function * BS-103 | Patrick | Modify test cases for drug selection * BS-103 | removed patient resources from fhir bundle * BS-103 | updated the interaction type * BS-103 | make cdss call only when cdss enabled is true * BS-103 | fixed eslint issues * BS-103 | updated test file with mock to fix the build issue * BS-103 | resolve the concept source using drug id and storing it in local storage and use * BS-103 | Patrick | add cdss alerts for drug-diagnosis * BS-103 | Patrick | Limit audit eventType length * BS-103 | Patrick | Add label do CDSS critical dismissal options * BS-103 | Patrick | Remove extra div from alert * BS-103 | Patrick | Update audit order and dismissal label * BS-103 | Patrick | Update unit tests * BS-103 | Patrick | Add cdss alert source * BS-103 | Patrick | Refactor: rename variables and classes for clarity * BS-103 | Patrick | Added dynamic update of conditions * BS-103 | Patrick | Clear CDSS alerts when drugs form is cleared * Siva Reddy | Triggering Deployment in new repo for SNOMED * BS-103 | added condition concept system resolve logic and correspondi… (#565) * BS-103 | added condition concept system resolve logic and corresponding cdss logic * BS-103 | fixed ts lint issues * BS-103 | Patrick | Updated unit tests * BS-103 | patrick | Dismiss alerts when drug name input is cleared * BS-103 | Patrick | Add test for medication FHIR bundle * BS-103 | Patrick | Update CDSS alert dismissal options config name --------- Co-authored-by: Patrick Nyatindo <[email protected]> * BS-translations-fix | Patrick | Remove added translations to other languages other that English * Reverting SNOMED Specific Changes * Add wiki link in readme (#581) * BS-113 | Patrick | Add wiki link in readme * BS-113 | Patrick | Update SNOMED support in README * BS-48-fix | Patrick | Remove custom TS server error message (#583) * BS-148 | Adding support for multiple prefix search in drug order (#598) --------- Co-authored-by: vijayanandtwks <[email protected]> Co-authored-by: Patrick Nyatindo <[email protected]> Co-authored-by: manimaarans <[email protected]>
Bahmni · Jul 12, 2023 · c4a3fc4 · c4a3fc4
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diff --git a/README.md b/README.md
@@ -65,28 +65,42 @@ Resources to build the following docker images can be found in the [package](/pa
 
 ## Prevent Search Engines from Indexing the homepage
 
+
 >⚠️ : Search Engines are able to index the Bahmni App homepage. 
 
 This behaviour can be prevented by:
 
-1. **Adding a “noindex” metatag:** 
-   
+1. **Adding a “noindex” metatag:**
+
    The following tag should be inserted in the `<head>` section of the homepage's HTML markup:
+
    ```
    <meta name=”robots” content=”noindex”>
    ```
+
    Additionally, in order to both _de-index_ the homepage and not follow the links, use the `noindex` with the `nofollow` metatag:
+
    ```
    <meta name=”robots” content=”noindex,nofollow”>
    ```
-   > The same is already done [here](https://github.com/Bahmni/openmrs-module-bahmniapps/blob/master/package/docker/index.html#L5)
 
+   > The same is already done [here](https://github.com/Bahmni/openmrs-module-bahmniapps/blob/master/package/docker/index.html#L5)
+   >
 2. **Using an X-ROBOTS-TAG HTTP HEADER:**
 
    An `X-Robots-Tag` can be added to the HTTP response header. It has basically the same effect as a `noindex` tag, but with the additional options to specify conditions for different search engines. For more information, please see Google’s guide [here](https://developers.google.com/search/docs/advanced/robots/robots_meta_tag). Here are examples of X-Robots-Tag for specific functions:
-  
+
    - To de-index a web page:
+
    ```
    Header set X-Robots-Tag "noindex, nofollow"
    ```
+
+   > The same is already done [here](https://github.com/Bahmni/openmrs-module-bahmniapps/blob/master/package/docker/httpd.conf#L32)
+   >
+
+### SNOMED Integration Support
+
+openmrs-module-bahmniapps also integrates with SNOMED for terminology lookup and CDSS. More details can be found in [this](https://bahmni.atlassian.net/wiki/spaces/BAH/pages/3132686337/SNOMED+FHIR+Terminology+Server+Integration+with+Bahmni) Wiki link
+=======
    > The same is already done [here](https://github.com/Bahmni/openmrs-module-bahmniapps/blob/master/package/docker/httpd.conf#L32)
diff --git a/ui/app/clinical/common/models/drugOrderViewModel.js b/ui/app/clinical/common/models/drugOrderViewModel.js
@@ -707,6 +707,7 @@ Bahmni.Clinical.DrugOrderViewModel.createFromContract = function (drugOrderRespo
         };
     }
     viewModel.instructions = administrationInstructions.instructions;
+    viewModel.audit = drugOrderResponse.audit;
     viewModel.additionalInstructions = administrationInstructions.additionalInstructions;
     viewModel.quantity = drugOrderResponse.dosingInstructions.quantity;
     viewModel.quantityUnit = drugOrderResponse.dosingInstructions.quantityUnits;

diff --git a/ui/app/clinical/consultation/controllers/addTreatmentController.js b/ui/app/clinical/consultation/controllers/addTreatmentController.js
diff --git a/ui/app/clinical/consultation/controllers/diagnosisController.js b/ui/app/clinical/consultation/controllers/diagnosisController.js
@@ -143,11 +143,13 @@ angular.module('bahmni.clinical')
                         value: concept.matchedName || concept.conceptName,
                         concept: {
                             name: concept.conceptName,
-                            uuid: concept.conceptUuid
+                            uuid: concept.conceptUuid,
+                            conceptSystem: concept.conceptSystem
                         },
                         lookup: {
                             name: concept.matchedName || concept.conceptName,
-                            uuid: concept.conceptUuid
+                            uuid: concept.conceptUuid,
+                            conceptSystem: concept.conceptSystem
                         }
                     };
 
@@ -163,6 +165,8 @@ angular.module('bahmni.clinical')
 
             $scope.getAddConditionMethod = function () {
                 return function (item) {
+                    var conceptSystem = item.lookup.conceptSystem ? item.lookup.conceptSystem + "/" : "";
+                    item.lookup.uuid = conceptSystem + item.lookup.uuid;
                     $scope.consultation.condition.concept.uuid = item.lookup.uuid;
                     item.value = $scope.consultation.condition.concept.name = item.lookup.name;
                 };
@@ -270,9 +274,9 @@ angular.module('bahmni.clinical')
             };
 
             $scope.cleanOutDiagnosisList = function (allDiagnoses) {
-                return allDiagnoses.filter(function (diagnosis) {
+                return allDiagnoses ? allDiagnoses.filter(function (diagnosis) {
                     return !alreadyAddedToDiagnosis(diagnosis);
-                });
+                }) : [];
             };
 
             var alreadyAddedToDiagnosis = function (diagnosis) {

diff --git a/ui/app/clinical/consultation/mappers/encounterTransactionMapper.js b/ui/app/clinical/consultation/mappers/encounterTransactionMapper.js
@@ -41,8 +41,9 @@ Bahmni.Clinical.EncounterTransactionMapper = function () {
 
         if (consultation.newlyAddedDiagnoses && consultation.newlyAddedDiagnoses.length > 0) {
             encounterData.bahmniDiagnoses = consultation.newlyAddedDiagnoses.map(function (diagnosis) {
+                var conceptSystem = diagnosis.codedAnswer.conceptSystem ? diagnosis.codedAnswer.conceptSystem + "/" : "";
                 return {
-                    codedAnswer: { uuid: !diagnosis.isNonCodedAnswer ? diagnosis.codedAnswer.uuid : undefined},
+                    codedAnswer: { uuid: !diagnosis.isNonCodedAnswer ? conceptSystem + diagnosis.codedAnswer.uuid : undefined},
                     freeTextAnswer: diagnosis.isNonCodedAnswer ? diagnosis.codedAnswer.name : undefined,
                     order: diagnosis.order,
                     certainty: diagnosis.certainty,

diff --git a/ui/app/clinical/consultation/models/drugSearchResult.js b/ui/app/clinical/consultation/models/drugSearchResult.js
@@ -18,7 +18,9 @@ Bahmni.Clinical.DrugSearchResult = (function () {
     var getMatcher = function (searchString) {
         return function (value) {
             // return value.search(new RegExp(searchString, "i")) !== -1
-            return _.includes(value.toLowerCase(), searchString.toLowerCase());
+            return _.every(searchString.split(" "), function (word) {
+                return _.includes(value.toLowerCase(), word.toLowerCase());
+            });
         };
     };
     var getSynonymCreator = function (drug) {

diff --git a/ui/app/clinical/consultation/views/treatmentSections/addTreatment.html b/ui/app/clinical/consultation/views/treatmentSections/addTreatment.html
@@ -259,9 +259,54 @@ <h3 class="orderSet-additional-info" ng-show="treatmentConfig.showAdditionalInfo
                     </div>
                 </article>
 
+                <h3 ng-show="cdssaAlerts && cdssaAlerts.length > 0" class="cdss-alerts">
+                    {{"CDSS_" + cdssaAlerts[0].indicator.toUpperCase() | translate}}
+                </h3>
+
+                    <div ng-repeat="cdssAlert in cdssaAlerts" class="cdss-alert" ng-class="{'alert-danger': cdssAlert.indicator == 'critical', 'alert-warning': cdssAlert.indicator == 'warning', 'alert-info': cdssAlert.indicator == 'info'}" ng-show="cdssAlert">
+                        <button ng-disabled="cdssAlert.indicator == 'critical'" type="button" class="cdss-alert-close" ng-click="closeAlert($index)">&times;</button>
+                        <i class="fa" aria-hidden="true"
+                             ng-class="{'fa-exclamation-triangle': cdssAlert.indicator == 'critical' || cdssAlert.indicator == 'warning', 'fa-info-circle': cdssAlert.indicator == 'info'}"
+                        ></i>
+                        <div>
+                            <div ng-click="toggleAlertDetails($index)" class="cdss-alert-summary">
+                                <span>{{cdssAlert.summary}}</span>
+                                <i class="fa" ng-class="{'fa-angle-up': cdssAlert.showDetails, 'fa-angle-down': !cdssAlert.showDetails}"></i>
+                            </div>
+                            <div class="cdss-alert-details" ng-show="cdssAlert.showDetails">
+                                <span>{{cdssAlert.detail}}</span>
+                                <a href="{{cdssAlert.source.url}}" target="_blank" ng-show="cdssAlert.source.url">
+                                    <i class="fa fa-question-circle"></i>
+                                </a>
+                                <div ng-show="cdssAlert.indicator == 'critical'">
+                                     <div class="field-value">
+                                    <select id="cdss-audit" class="form-field cdss-alert-close-reason"
+                                            ng-options="item as (item | translate) for item in auditOptions()"
+                                            ng-model="treatment.audit"
+                                            >
+                                        <option disabled value="">{{"CDSS_ALERT_DISMISSAL_REASON" | translate}}</option>
+                                    </select>
+                                </div>
+
+                                <div class="operations fr clearfix" ng-show="cdssAlert.indicator == 'critical'">
+                                    <button 
+                                    ng-click="submitAudit($index)"
+                                    ng-disabled="!treatment.audit"
+                                     type="button" class="icon-button secondary-button" tabindex="1" title="Dismiss">
+                                        {{'CDSS_ALERT_DISMISS' | translate}}
+                                    </button>
+                                </div>
+                                </div>
+
+                            </div>
+
+                        </div>
+                    </div>
+
+
                 <div class="operations fr clearfix">
                     <button class="add-drug-btn secondary-button fl" type="submit" accesskey="{{ ::treatmentConfig.translate('addAccessKey', 'MEDICATION_ADD_ACCESS_KEY') }}"
-                            ng-disabled="!treatment.drug.uuid && !treatment.concept.uuid && treatment.drugNameDisplay && !treatment.isNonCodedDrug">
+                            ng-disabled="!treatment.drug.uuid && !treatment.concept.uuid && treatment.drugNameDisplay && !treatment.isNonCodedDrug || (cdssaAlerts && cdssaAlerts[0].indicator == 'critical')">
                              <span ng-bind-html="::treatmentConfig.translate('add', 'MEDICATION_ADD_BUTTON_LABEL')">
                         </span>
                     </button>

diff --git a/ui/app/common/constants.js b/ui/app/common/constants.js
@@ -15,6 +15,7 @@ Bahmni.Common = Bahmni.Common || {};
     var BASE_URL = hostUrl + "/bahmni_config/openmrs/apps/";
     var CUSTOM_URL = hostUrl + "/implementation_config/openmrs/apps/";
     var IE_APPS_API = RESTWS_V1 + "/bahmniie";
+    var FHIR_BASE_URL = hostUrl + "/openmrs/ws/fhir2/R4";
 
     var serverErrorMessages = [
         {
@@ -75,11 +76,14 @@ Bahmni.Common = Bahmni.Common || {};
         diseaseTemplateUrl: BAHMNI_CORE + "/diseaseTemplates",
         AllDiseaseTemplateUrl: BAHMNI_CORE + "/diseaseTemplate",
         emrapiConceptUrl: EMRAPI + "/concept",
+        bahmniapiConceptUrl: BAHMNI_COMMONS + "/terminologies/concepts",
         encounterConfigurationUrl: BAHMNI_CORE + "/config/bahmniencounter",
         patientConfigurationUrl: BAHMNI_CORE + "/config/patient",
         drugOrderConfigurationUrl: BAHMNI_CORE + "/config/drugOrders",
         emrEncounterUrl: EMRAPI + "/encounter",
         encounterUrl: RESTWS_V1 + "/encounter",
+        cdssUrl: RESTWS_V1 + "/cdss",
+        fhirMedicationsUrl: FHIR_BASE_URL + "/Medication",
         locationUrl: RESTWS_V1 + "/location",
         bahmniVisitLocationUrl: BAHMNI_CORE + "/visitLocation",
         bahmniFacilityLocationUrl: BAHMNI_CORE + "/facilityLocation",

diff --git a/ui/app/common/domain/services/diagnosisService.js b/ui/app/common/domain/services/diagnosisService.js
@@ -4,7 +4,7 @@ angular.module('bahmni.common.domain')
     .service('diagnosisService', ['$http', '$rootScope', function ($http, $rootScope) {
         var self = this;
         this.getAllFor = function (searchTerm, locale) {
-            var url = Bahmni.Common.Constants.emrapiConceptUrl;
+            var url = Bahmni.Common.Constants.bahmniapiConceptUrl;
             var parameters = {term: searchTerm, limit: Bahmni.Common.Constants.emrapiDiagnosisLimit};
             if (locale) {
                 parameters.locale = locale;
@@ -25,6 +25,10 @@ angular.module('bahmni.common.domain')
             var url = Bahmni.Common.Constants.bahmniDeleteDiagnosisUrl;
             return $http.get(url, {
                 params: {obsUuid: obsUuid}
+            }, function (response) {
+                return response;
+            }, function (error) {
+                return error;
             });
         };
 

diff --git a/ui/app/common/services/drugService.js b/ui/app/common/services/drugService.js
@@ -1,7 +1,7 @@
 'use strict';
 angular.module('bahmni.common.services')
     .factory('drugService', ['$http', function ($http) {
-        var v = 'custom:(uuid,strength,name,dosageForm,concept:(uuid,name,names:(name)))';
+        var v = 'custom:(uuid,strength,drugReferenceMaps,name,dosageForm,concept:(uuid,name,names:(name)))';
         var search = function (drugName, conceptUuid) {
             var params = {
                 v: v,
@@ -46,9 +46,52 @@ angular.module('bahmni.common.services')
             });
         };
 
+        var sendDiagnosisDrugBundle = function (bundle) {
+            return $http.post(Bahmni.Common.Constants.cdssUrl, bundle, {
+                withCredentials: true,
+                params: { service: 'medication-order-select' }
+            });
+        };
+
+        var cdssAudit = function (patientUuid, eventType, message, module) {
+            var alertData = {
+                patientUuid: patientUuid,
+                eventType: eventType,
+                message: message,
+                module: module
+            };
+            return $http.post(Bahmni.Common.Constants.auditLogUrl, alertData, {
+                withCredentials: true
+            });
+        };
+
+        var getDrugConceptSourceMapping = function (drugUuid) {
+            var params = {
+                _id: drugUuid
+            };
+
+            return $http.get(Bahmni.Common.Constants.fhirMedicationsUrl, {
+                params: params,
+                withCredentials: true
+            });
+        };
+        var getCdssEnabled = function () {
+            return $http.get(Bahmni.Common.Constants.globalPropertyUrl, {
+                method: "GET",
+                params: {
+                    property: 'cdss.enable'
+                },
+                withCredentials: true
+            });
+        };
+
         return {
             search: search,
             getRegimen: getRegimen,
-            getSetMembersOfConcept: getSetMembersOfConcept
+            getSetMembersOfConcept: getSetMembersOfConcept,
+            sendDiagnosisDrugBundle: sendDiagnosisDrugBundle,
+            getDrugConceptSourceMapping: getDrugConceptSourceMapping,
+            getCdssEnabled: getCdssEnabled,
+            cdssAudit: cdssAudit
         };
     }]);
diff --git a/ui/app/common/ui-helper/services/messagingService.js b/ui/app/common/ui-helper/services/messagingService.js
@@ -11,9 +11,12 @@ angular.module('bahmni.common.uiHelper')
 
         this.showMessage = function (level, message, errorEvent) {
             var messageObject = {'value': '', 'isServerError': false};
-            messageObject.value = message;
+            messageObject.value = message.replace(/\[|\]|null/g, '');
             if (errorEvent) {
                 messageObject.isServerError = true;
+                if (!self.messages[level].length) {
+                    this.createTimeout('error', 6000);
+                }
             } else if (level == 'info') {
                 this.createTimeout('info', 4000);
             }
@@ -25,7 +28,9 @@ angular.module('bahmni.common.uiHelper')
             if (index >= 0) {
                 this.messages[level].splice(index, 1);
             }
-            this.messages[level].push(messageObject);
+            if (messageObject.value) {
+                this.messages[level].push(messageObject);
+            }
         };
 
         this.createTimeout = function (level, time) {

diff --git a/ui/app/i18n/clinical/locale_en.json b/ui/app/i18n/clinical/locale_en.json
@@ -371,5 +371,18 @@
   "SHARE_PRESCRIPTION_MAIL_CONTENT": "Hi #recipientName,\nThanks for visiting #locationName on #visitDate. Your prescription is attached with this email. Wish you a speedy recovery.\nThanks.\n#locationName\n#locationAddress",
   "CHIEF_COMPLAINT_CODED_KEY": "Chief Complaint Coded",
   "SIGN_SYMPTOM_DURATION_KEY": "Sign/symptom duration",
-  "CHIEF_COMPLAINT_DURATION_UNIT_KEY": "Chief Complaint Duration"
+  "CHIEF_COMPLAINT_DURATION_UNIT_KEY": "Chief Complaint Duration",
+  "FALSE_POSITIVE_ALERT": "The alert triggered, but it was a false positive and no action is needed.",
+  "NOT_APPLICABLE_TO_THE_PATIENT": "The alert does not apply to the patient in question.",
+  "ALREADY_RESOLVED_BY_MEDICATION_ADJUSTMENT": "The alert was previously resolved by adjusting the patient's medication.",
+  "ALREADY_MANAGED_BY_OTHER_MEANS": "The alert was previously managed by other means, and no further action is needed.",
+  "PATIENT_DECLINED_RECOMMENDED_ACTION": "The patient declined the recommended action despite the alert.",
+  "CLINICIAN_JUDGMENT_OVERRODE_RECOMMENDATION": "The clinician used their judgment to override the recommendation generated by the alert.",
+  "ALERT_TRIGGERED_IN_ERROR": "The alert triggered in error, and no action is needed.",
+  "INSUFFICIENT_INFORMATION_TO_ACT_ON_ALERT": "There is not enough information available to act on the alert.",
+  "CDSS_WARNING" :"Warning",
+  "CDSS_CRITICAL" :"Critical",
+  "CDSS_ALERT_DISMISSAL_REASON" :"Select reason for dismissal",
+  "CDSS_INFO" :"Info",
+  "CDSS_ALERT_DISMISS": "Dismiss"
 }